Now showing items 109-128 of 320

    • Generating software for MUB complementary sequence constructions 

      Roodashty, Hanieh (The University of Bergen, 2015-11-18)
      This master thesis has been performed at the Department of Informatics, University of Bergen between February and November 2015. The work has been supervised by Professor Matthew G. Parker as a part of the research interest ...
      Master thesis
    • Generating tree-like graphs 

      Moldeklev, Elisabeth (The University of Bergen, 2008-11-18)
      Implementation of an algorithm that interactively generates k-graphs, a superclass of k-branches.
      Master thesis
    • The genome sequence of Atlantic cod reveals a unique immune system 

      Star, Bastiaan; Nederbragt, Alexander Johan; Jentoft, Sissel; Grimholt, Unni; Malmstrøm, Martin; Gregers, Tone Fredsvik; Rounge, Trine Ballestad; Paulsen, Jonas; Solbakken, Monica Hongrø; Sharma, Animesh; Wetten, Ola Frang; Lanzén, Anders; Winer, Roger; Knight, James; Vogel, Jan-Hinnerk; Aken, Bronwen; Andersen, Øivind; Lagesen, Karin; Tooming-Klunderud, Ave; Edvardsen, Rolf; Kirubakaran, G. Tina; Espelund, Mari; Nepal, Chirag; Previti, A. Christopher; Karlsen, Bård Ove; Moum, Truls; Skage, Morten; Berg, Paul Ragnar; Gjøen, Tor; Kuhl, Heiner; Thorsen, Jim; Malde, Ketil; Reinhardt, Richard; Du, Lei; Johansen, Steinar Daae; Searle, Steve; Lien, Sigbjørn; Nilsen, Frank; Jonassen, Inge; Omholt, Stig W; Stenseth, Nils Christian; Jakobsen, Kjetill Sigurd (Nature Publishing Group, 2011-09)
      Atlantic cod (Gadus morhua) is a large, cold-adapted teleost that sustains long-standing commercial fisheries and incipient aquaculture. Here we present the genome sequence of Atlantic cod, showing evidence for complex ...
      Journal article
    • The Genomic HyperBrowser: an analysis web server for genome-scale data 

      Sandve, Geir Kjetil; Gundersen, Sveinung; Johansen, Morten; Glad, Ingrid Kristine; Gunathasan, Krishanthi; Holden, Lars; Holden, Marit; Liestøl, Knut; Nygård, Ståle; Nygaard, Vegard; Paulsen, Jonas; Rydbeck, Halfdan; Trengereid, Kai; Clancy, Trevor; Drabløs, Finn; Ferkingstad, Egil; Kalaš, Matúš; Lien, Tonje Gulbrandsen; Rye, Morten Beck; Frigessi, Arnoldo; Hovig, Johannes Eivind (Oxford University Press (OUP), 2013-04-30)
      The immense increase in availability of genomic scale datasets, such as those provided by the ENCODE and Roadmap Epigenomics projects, presents unprecedented opportunities for individual researchers to pose novel falsifiable ...
      Journal article
    • A geometry-based generic predictor for catalytic and allosteric sites 

      Mitternacht, Simon; Berezovsky, Igor N. (Oxford University Press, 2011)
      An important aspect of understanding protein allostery, and of artificial effector design, is the characterization and prediction of substrate- and effector-binding sites. To find binding sites in allosteric enzymes, many ...
      Journal articlePeer reviewed
    • Grein. A New Non-Linear Cryptoprimitive 

      Thorsen, Ole Rydland (The University of Bergen, 2013-12-10)
      In this thesis, we will study a new stream cipher, Grein, and a new cryptoprimitive used in this cipher. The second chapter gives a brief introduction to cryptography in general. The third chapter looks at stream ciphers ...
      Master thesis
    • Guaranteeing Resource Bounds for Component Software 

      Truong, Anh Hoang (Springer Berlin Heidelberg, 2005-06-15)
      Component software is software that has been assembled from various pieces of standardized, reusable computer programs, so-called components. Executing component software creates instances of these components. For several ...
      Journal article
    • Hash functions in Cryptography 

      Grah, Joseph Sterling (The University of Bergen, 2008)
      This thesis is concerned with giving both an overview of the application of hash functions in cryptography and a presentation of today's standard cryptographic hash functions. Cryptographic hash functions are a valuable ...
      Master thesis
    • Hashfunksjoner for bruk i Digitale Signaturer 

      Solvik, Jan Anders (The University of Bergen, 1995)
      Master thesis
    • A Hierarchical Splitting Scheme to Reveal Insight into Highly Self-Occluded Integral Surfaces 

      Brambilla, Andrea; Viola, Ivan; Hauser, Helwig (Václav Skala - UNION Agency, 2012)
      In flow visualization, integral surfaces are of particular interest for their ability to describe trajectories of massless particles. In areas of swirling motion, integral surfaces can become very complex and difficult ...
      Journal article
    • High-performance design patterns for modern Fortran 

      Haveraaen, Magne; Morris, Karla; Rouson, Damian; Radhakrishnan, Hari; Carson, Clayton (Hindawi, 2015)
      This paper presents ideas for using coordinate-free numerics in modern Fortran to achieve code flexibility in the partial differential equation (PDE) domain. We also show how Fortran, over the last few decades, has changed ...
      Journal article
    • Highlights from the Eighth International Society for Computational Biology (ISCB) Student Council Symposium 2012 

      Goncearenco, Alexander; Grynberg, Priscila; Botvinnik, Olga B.; Macintyre, Geoff; Abeel, Thomas (BioMed Central, 2012-12-14)
      Abstract The report summarizes the scientific content of the annual symposium organized by the Student Council of the International Society for Computational Biology (ISCB) held in conjunction ...
      Journal article
    • How to cope with incorrect HTML 

      Parnas, Dagfinn (The University of Bergen, 2001)
      Master thesis
    • Hybrid visibility compositing and masking for illustrative rendering 

      Bruckner, Stefan; Rautek, Peter; Viola, Ivan; Roberts, Mike; Sousa, Mario Costa; Gröller, M. Eduard (Elsevier, 2010-08)
      In this paper, we introduce a novel framework for the compositing of interactively rendered 3D layers tailored to the needs of scientific illustration. Currently, traditional scientific illustrations are produced in a ...
      Journal article
    • Identifying elemental genomic track types and representing them uniformly 

      Gundersen, Sveinung; Kalaš, Matúš; Abul, Osman; Frigessi, Arnoldo; Hovig, Eivind; Sandve, Geir Kjetil (BioMed Central, 2011-12-30)
      Background: With the recent advances and availability of various high-throughput sequencing technologies, data on many molecular aspects, such as gene regulation, chromatin dynamics, and the three-dimensional organization ...
      Journal article
    • Illustrative Flow Visualization: State of the Art, Trends and Challenges 

      Brambilla, Andrea; Carnecky, Robert; Peikert, Robert; Viola, Ivan; Hauser, Helwig (The Eurographics Association, 2012)
      Flow visualization is a well established branch of scientific visualization and it currently represents an invaluable resource to many fields, like automotive design, meteorology and medical imaging. Thanks to the ...
      Journal article
    • Implementasjon av attributtbasert tilgangskontroll i elektroniske helsesystemer 

      Kristensen, André Sæ (The University of Bergen, 2015-05-28)
      Tilgangskontroll er et av de viktigste temaene innenfor informasjonssikkerhet[10]. Sensitiv data bør bare kunne aksesseres av autoriserte brukere eller programmer. Denne oppgaven har som hovedmål å undersøke den nåværende ...
      Master thesis
    • An implementation of a Feedback Vertex Set algorithm. 

      Sivertsen, Arvid Soldal (The University of Bergen, 2013-06-03)
      An implementation, improvements to implementation and empirical results. Feedback Vertex Set on undirected and unweighted graphs.
      Master thesis
    • An improved workflow for image- and laser-based virtual geological outcrop modelling 

      Sima, Aleksandra A. (The University of Bergen, 2013-03-15)
      Photorealistic 3D models, representing an object’s surface geometry textured with conventional photography, are used for visualization, interpretation and spatial measurement in many disparate fields, such as cultural ...
      Doctoral thesis