Now showing items 114-133 of 365

    • FreeContact: fast and free software for protein contact prediction from residue co-evolution 

      Kaján, László; Hopf, Thomas A.; Kalaš, Matúš; Marks, Debora S.; Rost, Burkhard (BioMed Central, 2014-03-26)
      Background: 20 years of improved technology and growing sequences now renders residue-residue contact constraints in large protein families through correlated mutations accurate enough to drive de novo predictions of protein ...
      Journal article
    • FreeContact: Fast and free software for protein contact prediction from residue co-evolution 

      Kaján, László; Hopf, Thomas A.; Kalaš, Matúš; Marks, Debora S.; Rost, Burkhard (BioMed Central, 2014-03-26)
      Background: 20 years of improved technology and growing sequences now renders residue-residue contact constraints in large protein families through correlated mutations accurate enough to drive de novo predictions of protein ...
      Journal article
    • Fusing a Transformation Language with an Open Compiler 

      Kalleberg, Karl Trygve; Visser, Eelco (Elsevier, 2008-04-01)
      Program transformation systems provide powerful analysis and transformation frameworks as well as concise languages for language processing, but instantiating them for every subject language is an arduous task, most often ...
      Journal article
    • Generalized Bent and/or Negabent Constructions 

      Ådlandsvik, Yngve (The University of Bergen, 2012-04-27)
      In this thesis, we generalize the Maiorana-McFarland construction for bent, negabent and bent-negabent Boolean functions and describe a way to computationally search for constructions using these generalizations. We present ...
      Master thesis
    • Generating a synthetic diffusion tensor dataset 

      Bergmann, Ørjan; Lundervold, Arvid; Steihaug, Trond (IEEE, 2005)
      During the last years, many techniques for de-noising, segmentation and fiber-tracking have been applied to diffusion tensor MR image data (DTI) from human and animal brains. However, evaluating such methods may be difficult ...
      Peer reviewedJournal article
    • Generating software for MUB complementary sequence constructions 

      Roodashty, Hanieh (The University of Bergen, 2015-11-18)
      This master thesis has been performed at the Department of Informatics, University of Bergen between February and November 2015. The work has been supervised by Professor Matthew G. Parker as a part of the research interest ...
      Master thesis
    • Generating tree-like graphs 

      Moldeklev, Elisabeth (The University of Bergen, 2008-11-18)
      Implementation of an algorithm that interactively generates k-graphs, a superclass of k-branches.
      Master thesis
    • The genome sequence of Atlantic cod reveals a unique immune system 

      Star, Bastiaan; Nederbragt, Alexander Johan; Jentoft, Sissel; Grimholt, Unni; Malmstrøm, Martin; Gregers, Tone Fredsvik; Rounge, Trine Ballestad; Paulsen, Jonas; Solbakken, Monica Hongrø; Sharma, Animesh; Wetten, Ola Frang; Lanzén, Anders; Winer, Roger; Knight, James; Vogel, Jan-Hinnerk; Aken, Bronwen; Andersen, Øivind; Lagesen, Karin; Tooming-Klunderud, Ave; Edvardsen, Rolf; Kirubakaran, G. Tina; Espelund, Mari; Nepal, Chirag; Previti, A. Christopher; Karlsen, Bård Ove; Moum, Truls; Skage, Morten; Berg, Paul Ragnar; Gjøen, Tor; Kuhl, Heiner; Thorsen, Jim; Malde, Ketil; Reinhardt, Richard; Du, Lei; Johansen, Steinar Daae; Searle, Steve; Lien, Sigbjørn; Nilsen, Frank; Jonassen, Inge; Omholt, Stig W; Stenseth, Nils Christian; Jakobsen, Kjetill Sigurd (Nature Publishing Group, 2011-09)
      Atlantic cod (Gadus morhua) is a large, cold-adapted teleost that sustains long-standing commercial fisheries and incipient aquaculture. Here we present the genome sequence of Atlantic cod, showing evidence for complex ...
      Journal article
    • The Genomic HyperBrowser: an analysis web server for genome-scale data 

      Sandve, Geir Kjetil; Gundersen, Sveinung; Johansen, Morten; Glad, Ingrid Kristine; Gunathasan, Krishanthi; Holden, Lars; Holden, Marit; Liestøl, Knut; Nygård, Ståle; Nygaard, Vegard; Paulsen, Jonas; Rydbeck, Halfdan; Trengereid, Kai; Clancy, Trevor; Drabløs, Finn; Ferkingstad, Egil; Kalaš, Matúš; Lien, Tonje Gulbrandsen; Rye, Morten Beck; Frigessi, Arnoldo; Hovig, Johannes Eivind (Oxford University Press (OUP), 2013-04-30)
      The immense increase in availability of genomic scale datasets, such as those provided by the ENCODE and Roadmap Epigenomics projects, presents unprecedented opportunities for individual researchers to pose novel falsifiable ...
      Journal article
    • A geometry-based generic predictor for catalytic and allosteric sites 

      Mitternacht, Simon; Berezovsky, Igor N. (Oxford University Press, 2011)
      An important aspect of understanding protein allostery, and of artificial effector design, is the characterization and prediction of substrate- and effector-binding sites. To find binding sites in allosteric enzymes, many ...
      Journal articlePeer reviewed
    • Graphical Computing Solution for Industrial Plant Engineering 

      Lima, Marcelo Furtado (The University of Bergen, 2017-06-21)
      When preparing an engineering operation on an industrial plant, reliable and updated models of the plant must be available for correct decisions and planning. However, especially in the case of offshore oil and gas ...
      Master thesis
    • Grein. A New Non-Linear Cryptoprimitive 

      Thorsen, Ole Rydland (The University of Bergen, 2013-12-10)
      In this thesis, we will study a new stream cipher, Grein, and a new cryptoprimitive used in this cipher. The second chapter gives a brief introduction to cryptography in general. The third chapter looks at stream ciphers ...
      Master thesis
    • Guaranteeing Resource Bounds for Component Software 

      Truong, Anh Hoang (Springer Berlin Heidelberg, 2005-06-15)
      Component software is software that has been assembled from various pieces of standardized, reusable computer programs, so-called components. Executing component software creates instances of these components. For several ...
      Journal article
    • Hash functions in Cryptography 

      Grah, Joseph Sterling (The University of Bergen, 2008)
      This thesis is concerned with giving both an overview of the application of hash functions in cryptography and a presentation of today's standard cryptographic hash functions. Cryptographic hash functions are a valuable ...
      Master thesis
    • Hashfunksjoner for bruk i Digitale Signaturer 

      Solvik, Jan Anders (The University of Bergen, 1995)
      Master thesis
    • A Hierarchical Splitting Scheme to Reveal Insight into Highly Self-Occluded Integral Surfaces 

      Brambilla, Andrea; Viola, Ivan; Hauser, Helwig (Václav Skala - UNION Agency, 2012)
      In flow visualization, integral surfaces are of particular interest for their ability to describe trajectories of massless particles. In areas of swirling motion, integral surfaces can become very complex and difficult ...
      Journal article
    • High-performance design patterns for modern Fortran 

      Haveraaen, Magne; Morris, Karla; Rouson, Damian; Radhakrishnan, Hari; Carson, Clayton (Hindawi, 2015)
      This paper presents ideas for using coordinate-free numerics in modern Fortran to achieve code flexibility in the partial differential equation (PDE) domain. We also show how Fortran, over the last few decades, has changed ...
      Journal article
    • Highlights from the Eighth International Society for Computational Biology (ISCB) Student Council Symposium 2012 

      Goncearenco, Alexander; Grynberg, Priscila; Botvinnik, Olga B.; Macintyre, Geoff; Abeel, Thomas (BioMed Central, 2012-12-14)
      Abstract The report summarizes the scientific content of the annual symposium organized by the Student Council of the International Society for Computational Biology (ISCB) held in conjunction ...
      Journal article
    • How to cope with incorrect HTML 

      Parnas, Dagfinn (The University of Bergen, 2001)
      Master thesis
    • Hybrid visibility compositing and masking for illustrative rendering 

      Bruckner, Stefan; Rautek, Peter; Viola, Ivan; Roberts, Mike; Sousa, Mario Costa; Gröller, M. Eduard (Elsevier, 2010-08)
      In this paper, we introduce a novel framework for the compositing of interactively rendered 3D layers tailored to the needs of scientific illustration. Currently, traditional scientific illustrations are produced in a ...
      Journal article