Blar i Department of Informatics på forfatter "Martens, Lennart"
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OLS Dialog: An open-source front end to the Ontology Lookup Service
Barsnes, Harald; Côté, Richard G.; Eidhammer, Ingvar; Martens, Lennart (Peer reviewed; Journal article, 2010-01-17)Background: With the growing amount of biomedical data available in public databases it has become increasingly important to annotate data in a consistent way in order to allow easy access to this rich source of information. ... -
The Ontology Lookup Service: bigger and better
Côté, Richard G.; Reisinger, Florian; Martens, Lennart; Barsnes, Harald; Vizcaíno, Juan Antonio; Hermjakob, Henning (Peer reviewed; Journal article, 2010-05-11)The Ontology Lookup Service (OLS; http://www.ebi .ac.uk/ols) has been providing several means to query, browse and navigate biomedical ontologies and controlled vocabularies since it first went into production 4 years ago, ... -
The Proteomics Identifications database: 2010 update
Vizcaíno, Juan Antonio; Côté, Richard G.; Reisinger, Florian; Barsnes, Harald; Foster, JM; Rameseder, Jonathan; Hermjakob, Henning; Martens, Lennart (Peer reviewed; Journal article, 2009-11-11)The Proteomics Identifications database (PRIDE, http://www.ebi.ac.uk/pride) at the European Bioinformatics Institute has become one of the main repositories of mass spectrometry-derived proteomics data. For the last 2 ... -
ThermoRawFileParser: Modular, Scalable, and Cross-Platform RAW File Conversion
Hulstaert, Niels; Shofstahl, Jim; Sachsenberg, Timo; Walzer, Mathias; Barsnes, Harald; Martens, Lennart; Perez-Riverol, Yasset (Journal article; Peer reviewed, 2020)The field of computational proteomics is approaching the big data age, driven both by a continuous growth in the number of samples analyzed per experiment as well as by the growing amount of data obtained in each analytical ...