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dc.contributor.authorColaert, Niklaasen_US
dc.contributor.authorBarsnes, Haralden_US
dc.contributor.authorVaudel, Marcen_US
dc.contributor.authorHelsens, Kennyen_US
dc.contributor.authorTimmerman, Evyen_US
dc.contributor.authorSickmann, Alberten_US
dc.contributor.authorGevaert, Krisen_US
dc.contributor.authorMartens, Lennarten_US
dc.date.accessioned2017-09-20T11:18:46Z
dc.date.available2017-09-20T11:18:46Z
dc.date.issued2011
dc.PublishedColaert N, Barsnes H, Vaudel M, Helsens K, Timmerman E, Sickmann A, Gevaert K, Martens L. thermo-msf-parser: An Open Source Java Library to Parse and Visualize Thermo Proteome Discoverer msf Files. Journal of Proteome Research. 2011;10(8):3840-3843eng
dc.identifier.issn1535-3907
dc.identifier.issn1535-3893
dc.identifier.urihttps://hdl.handle.net/1956/16679
dc.description.abstractThe Thermo Proteome Discoverer program integrates both peptide identification and quantification into a single workflow for peptide-centric proteomics. Furthermore, its close integration with Thermo mass spectrometers has made it increasingly popular in the field. Here, we present a Java library to parse the msf files that constitute the output of Proteome Discoverer. The parser is also implemented as a graphical user interface allowing convenient access to the information found in the msf files, and in Rover, a program to analyze and validate quantitative proteomics information. All code, binaries, and documentation is freely available at http://thermo-msf-parser.googlecode.com.en_US
dc.language.isoengeng
dc.publisherAmerican Chemical Societyeng
dc.subjectbioinformaticseng
dc.subjectMass spectrometryeng
dc.subjectProteomicseng
dc.titlethermo-msf-parser: An Open Source Java Library to Parse and Visualize Thermo Proteome Discoverer msf Filesen_US
dc.typePeer reviewed
dc.typeJournal article
dc.date.updated2017-09-08T10:24:06Z
dc.description.versionacceptedVersionen_US
dc.rights.holderCopyright 2011 American Chemical Society
dc.identifier.doihttps://doi.org/10.1021/pr2005154
dc.identifier.cristin851574
dc.source.journalJournal of Proteome Research
dc.relation.projectNorges forskningsråd: 204833
dc.subject.nsiVDP::Matematikk og naturvitenskap: 400::Basale biofag: 470::Bioinformatikk: 475
dc.subject.nsiVDP::Mathematics and natural scienses: 400::Basic biosciences: 470::Bioinformatics: 475


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