dc.contributor.author | Colaert, Niklaas | en_US |
dc.contributor.author | Barsnes, Harald | en_US |
dc.contributor.author | Vaudel, Marc | en_US |
dc.contributor.author | Helsens, Kenny | en_US |
dc.contributor.author | Timmerman, Evy | en_US |
dc.contributor.author | Sickmann, Albert | en_US |
dc.contributor.author | Gevaert, Kris | en_US |
dc.contributor.author | Martens, Lennart | en_US |
dc.date.accessioned | 2017-09-20T11:18:46Z | |
dc.date.available | 2017-09-20T11:18:46Z | |
dc.date.issued | 2011 | |
dc.Published | Colaert N, Barsnes H, Vaudel M, Helsens K, Timmerman E, Sickmann A, Gevaert K, Martens L. thermo-msf-parser: An Open Source Java Library to Parse and Visualize Thermo Proteome Discoverer msf Files. Journal of Proteome Research. 2011;10(8):3840-3843 | eng |
dc.identifier.issn | 1535-3907 | |
dc.identifier.issn | 1535-3893 | |
dc.identifier.uri | https://hdl.handle.net/1956/16679 | |
dc.description.abstract | The Thermo Proteome Discoverer program integrates both peptide identification and quantification into a single workflow for peptide-centric proteomics. Furthermore, its close integration with Thermo mass spectrometers has made it increasingly popular in the field. Here, we present a Java library to parse the msf files that constitute the output of Proteome Discoverer. The parser is also implemented as a graphical user interface allowing convenient access to the information found in the msf files, and in Rover, a program to analyze and validate quantitative proteomics information. All code, binaries, and documentation is freely available at http://thermo-msf-parser.googlecode.com. | en_US |
dc.language.iso | eng | eng |
dc.publisher | American Chemical Society | eng |
dc.subject | bioinformatics | eng |
dc.subject | Mass spectrometry | eng |
dc.subject | Proteomics | eng |
dc.title | thermo-msf-parser: An Open Source Java Library to Parse and Visualize Thermo Proteome Discoverer msf Files | en_US |
dc.type | Peer reviewed | |
dc.type | Journal article | |
dc.date.updated | 2017-09-08T10:24:06Z | |
dc.description.version | acceptedVersion | en_US |
dc.rights.holder | Copyright 2011 American Chemical Society | |
dc.identifier.doi | https://doi.org/10.1021/pr2005154 | |
dc.identifier.cristin | 851574 | |
dc.source.journal | Journal of Proteome Research | |
dc.relation.project | Norges forskningsråd: 204833 | |
dc.subject.nsi | VDP::Matematikk og naturvitenskap: 400::Basale biofag: 470::Bioinformatikk: 475 | |
dc.subject.nsi | VDP::Mathematics and natural scienses: 400::Basic biosciences: 470::Bioinformatics: 475 | |