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dc.contributor.authorLeprevost, Felipe da Veigaen_US
dc.contributor.authorGrüning, Björn A.en_US
dc.contributor.authorAlves Aflitos, Sauloen_US
dc.contributor.authorRöst, Hannes L.en_US
dc.contributor.authorUszkoreit, Julianen_US
dc.contributor.authorBarsnes, Haralden_US
dc.contributor.authorVaudel, Marcen_US
dc.contributor.authorMoreno, Pabloen_US
dc.contributor.authorGatto, Laurenten_US
dc.contributor.authorWeber, Jonasen_US
dc.contributor.authorBai, Mingzeen_US
dc.contributor.authorJimenez, Rafael C.en_US
dc.contributor.authorSachsenberg, Timoen_US
dc.contributor.authorPfeuffer, Julianusen_US
dc.contributor.authorVera Alvarez, Robertoen_US
dc.contributor.authorGriss, Johannesen_US
dc.contributor.authorNesvizhskii, Alexey I.en_US
dc.contributor.authorPerez-Riverol, Yasseten_US
dc.date.accessioned2020-05-13T11:10:43Z
dc.date.available2020-05-13T11:10:43Z
dc.date.issued2017-03-30
dc.PublishedLeprevost, Grüning, Alves Aflitos, Röst, Uszkoreit J, Barsnes H, Vaudel M, Moreno P, Gatto, Weber J, Bai, Jimenez, Sachsenberg, Pfeuffer, Vera Alvarez, Griss J, Nesvizhskii, Perez-Riverol Y. BioContainers: An open-source and community-driven framework for software standardization. Bioinformatics. 2017:33(16)eng
dc.identifier.issn1367-4811
dc.identifier.issn1367-4803
dc.identifier.urihttps://hdl.handle.net/1956/22224
dc.description.abstractMotivation BioContainers (biocontainers.pro) is an open-source and community-driven framework which provides platform independent executable environments for bioinformatics software. BioContainers allows labs of all sizes to easily install bioinformatics software, maintain multiple versions of the same software and combine tools into powerful analysis pipelines. BioContainers is based on popular open-source projects Docker and rkt frameworks, that allow software to be installed and executed under an isolated and controlled environment. Also, it provides infrastructure and basic guidelines to create, manage and distribute bioinformatics containers with a special focus on omics technologies. These containers can be integrated into more comprehensive bioinformatics pipelines and different architectures (local desktop, cloud environments or HPC clusters). Availability and Implementation The software is freely available at github.com/BioContainers/.en_US
dc.language.isoengeng
dc.publisherOxford University Presseng
dc.rightsAttribution CC BYeng
dc.rights.urihttp://creativecommons.org/licenses/by/4.0/eng
dc.titleBioContainers: An open-source and community-driven framework for software standardizationen_US
dc.typePeer reviewed
dc.typeJournal article
dc.date.updated2019-11-11T14:23:28Z
dc.description.versionpublishedVersionen_US
dc.rights.holderCopyright The Author 2017
dc.identifier.doihttps://doi.org/10.1093/bioinformatics/btx192
dc.identifier.cristin1539237
dc.source.journalBioinformatics
dc.relation.projectBergens forskningsstiftelse: BFS2016REK02
dc.relation.projectNorges forskningsråd: 251235


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