Now showing items 1092-1111 of 3245

    • Generating tree-like graphs 

      Moldeklev, Elisabeth (The University of Bergen, 2008-11-18)
      Implementation of an algorithm that interactively generates k-graphs, a superclass of k-branches.
      Master thesis
    • The genetic basis for ecological adaptation of the Atlantic herring revealed by genome sequencing 

      Barrio, Alvaro Martinez; Lamichhaney, Sangeet; Fan, Guangyi; Rafati, Nima; Pettersson, Mats; Zhang, He; Dainat, Jacques; Ekman, Diana; Höppner, Marc P.; Jern, Patric; Martin, Marcel; Nystedt, Björn; Liu, Xin; Chen, Wenbin; Liang, Xinming; Shi, Chengcheng; Fu, Yuanyuan; Ma, Kailong; Zhan, Xiao; Feng, Chungang; Gustafson, Ulla; Rubin, Carl-Johan; Almén, Markus Sällman; Blass, Martina; Casini, Michele; Folkvord, Arild; Laikre, Linda; Ryman, Nils; Lee, Simon Ming-Yuen; Xu, Xun; Andersson, Leif (eLife, 2016-05-03)
      Ecological adaptation is of major relevance to speciation and sustainable population management, but the underlying genetic factors are typically hard to study in natural populations due to genetic differentiation caused ...
      Journal article
    • Genetic diversification in the Tropical Western Atlantic Ocean: Phylogeography of the gastropod Bulla occidentalis 

      Aarø, Jørgen (The University of Bergen, 2011-06-01)
      The region under study is the Tropical Western Atlantic (TWA) which includes the Caribbean Sea with adjacent coastlines, the Gulf of Mexico, Bermuda and the coast of South America down to the tropical/temperate transitional ...
      Master thesis
    • Genetic diversity of Newcastle disease virus in Pakistan: a countrywide perspective 

      Shabbir, Muhammad Zubair; Zohari, Siamak; Yaqub, Tahir; Nazir, Jawad; Shabbir, Muhammad Abu Bakr; Mukhtar, Nadia; Shafee, Muhammad; Sajid, Muhammad; Anees, Muhammad; Abbas, Muhammad; Khan, Muhammad Tanveer; Ali, Asad Amanat; Ghafoor, Aamir; Ahad, Abdul; Channa, Aijaz Ali; Anjum, Aftab Ahmad; Hussain, Nazeer; Ahmad, Arfan; Goraya, Mohsan Ullah; Iqbal, Zahid; Khan, Sohail Ahmad; Aslam, Hassan bin; Zehra, Kiran; Sohail, Muhammad Umer; Yaqub, Waseem; Ahmad, Nisar; Berg, Mikael; Munir, Muhammad (BioMed Central, 2013-05-30)
      Background: Newcastle disease (ND) is one of the most deadly diseases of poultry around the globe. The disease is endemic in Pakistan and recurrent outbreaks are being reported regularly in wild captive, rural and ...
      Journal article
    • Genetic introgression of farmed salmon in native populations: quantifying the relative influence of population size and frequency of escapees 

      Heino, Mikko Petteri; Svåsand, Terje; Wennevik, Vidar; Glover, Kevin (Inter-Research, 2015-02-11)
      Farmed escapees may threaten the genetic integrity of native salmon populations through interbreeding. However, introgression requires survival until maturation, successful reproduction and successful early development. ...
      Journal article
    • Genetic ontogeny of pancreatic enzymes in Labrus bergylta larvae and the effect of feed type on enzyme activity and gene regulation 

      Hansen, Truls Wergeland (The University of Bergen, 2012-06-01)
      In the later years increased interest in the use of Labrus bergylta (ballan wrasse) as a cleaner fish on Salmo salar (Atlantic salmon) has caused the emergence of commercial farming of L. bergylta. In order to cultivate ...
      Master thesis
    • Genetic screening of farmed Atlantic salmon escapees demonstrates that triploid fish display reduced migration to freshwater 

      Glover, Kevin; Bos, J. B.; Urdal, Kurt; Madhun, Abdullah Sami; Sørvik, Anne Grete Eide; Unneland, Laila; Seliussen, Bjørghild Breistein; Skaala, Øystein; Skilbrei, Ove Tommy; Tang, Y.; Wennevik, Vidar (Springer, 2016-05)
      Each year, hundreds of thousands of farmed Atlantic salmon escape from fish farms into the wild. Some of these escapees enter freshwater, and manage to interbreed with native populations. To hinder further genetic introgression ...
      Journal article
    • Genome and low-iron response of an oceanic diatom adapted to chronic iron limitation 

      Lommer, Markus; Specht, Michael; Roy, Alexandra-Sophie; Kraemer, Lars; Andreson, Reidar; Gutowska, Magdalena A.; Wolf, Juliane; Bergner, Sonja V.; Schilhabel, Markus B.; Klostermeier, Ulrich C.; Beiko, Robert G.; Rosenstiel, Philip; Hippler, Michael; LaRoche, Julie (BioMed Central, 2012-07-26)
      Background: Biogeochemical elemental cycling is driven by primary production of biomass via phototrophic phytoplankton growth, with 40% of marine productivity being assigned to diatoms. Phytoplankton growth is widely limited ...
      Journal article
    • The genome sequence of Atlantic cod reveals a unique immune system 

      Star, Bastiaan; Nederbragt, Alexander Johan; Jentoft, Sissel; Grimholt, Unni; Malmstrøm, Martin; Gregers, Tone Fredsvik; Rounge, Trine Ballestad; Paulsen, Jonas; Solbakken, Monica Hongrø; Sharma, Animesh; Wetten, Ola Frang; Lanzén, Anders; Winer, Roger; Knight, James; Vogel, Jan-Hinnerk; Aken, Bronwen; Andersen, Øivind; Lagesen, Karin; Tooming-Klunderud, Ave; Edvardsen, Rolf; Kirubakaran, G. Tina; Espelund, Mari; Nepal, Chirag; Previti, A. Christopher; Karlsen, Bård Ove; Moum, Truls; Skage, Morten; Berg, Paul Ragnar; Gjøen, Tor; Kuhl, Heiner; Thorsen, Jim; Malde, Ketil; Reinhardt, Richard; Du, Lei; Johansen, Steinar Daae; Searle, Steve; Lien, Sigbjørn; Nilsen, Frank; Jonassen, Inge; Omholt, Stig W; Stenseth, Nils Christian; Jakobsen, Kjetill Sigurd (Nature Publishing Group, 2011-09)
      Atlantic cod (Gadus morhua) is a large, cold-adapted teleost that sustains long-standing commercial fisheries and incipient aquaculture. Here we present the genome sequence of Atlantic cod, showing evidence for complex ...
      Journal article
    • Genome-wide analysis of the sox family in the calcareous sponge Sycon ciliatum: multiple genes with unique expression patterns 

      Fortunato, Sofia; Adamski, Marcin; Bergum, Brith; Guder, Corina; Jordal, Signe; Rapp, Hans Tore; Leininger, Sven; Zwafink, Christin; Adamska, Maja (BioMed Central, 2012-06-23)
      Background: Sox genes are HMG-domain containing transcription factors with important roles in developmental processes in animals; many of them appear to have conserved functions among eumetazoans. Demosponges have fewer ...
      Peer reviewedJournal article
    • Genome-wide DNA methylation profiling of non-small cell lung carcinomas 

      Carvalho, Rejane Hughes; Haberle, Vanja; Hou, Jun; van Gent, Teus; Thongjuea, Supat; van Ijcken, Wilfred F.J.; Kockx, Christel; Brouwer, Rutger; Rijkers, Erikjan; Sieuwerts, Anieta; Foekens, John; van Vroonhoven, Mirjam; Aerts, Joachim; Grosveld, Frank; Lenhard, Boris; Philipsen, Sjaak (BioMed Central, 2012-06-22)
      Background: Non-small cell lung carcinoma (NSCLC) is a complex malignancy that owing to its heterogeneity and poor prognosis poses many challenges to diagnosis, prognosis and patient treatment. DNA methylation is an important ...
      Journal article
    • The genome-wide dynamics of the binding of Ldb1 complexes during erythroid differentiation 

      Soler, Eric; Andrieu-Soler, Charlotte; Boer, Ernie de; Bryne, Jan Christian; Thongjuea, Supat; Stadhouders, Ralph; Palstra, Robert-Jan; Stevens, Mary; Kockx, Christel; IJcken, Wilfred van; Hou, Jun; Steinhoff, Christine; Rijkers, Erikjan; Lenhard, Boris; Grosveld, Frank (Cold Spring Harbor Laboratory Press, 2009)
      One of the complexes formed by the hematopoietic transcription factor Gata1 is a complex with the Ldb1 (LIM domain-binding protein 1) and Tal1 proteins. It is known to be important for the development and differentiation ...
      Journal article
    • Genomic characterization and phylogenetic position of two new species in Rhabdoviridae infecting the parasitic copepod, salmon louse (Lepeophtheirus salmonis) 

      Økland, Arnfinn Lodden; Nylund, Are; Øvergård, Aina-Cathrine; Blindheim, Steffen H.; Watanabe, Kuninori; Grotmol, Sindre; Arnesen, Carl-Erik; Plarre, Heidrun (Public Library of Science, 2014-11-17)
      Several new viruses have emerged during farming of salmonids in the North Atlantic causing large losses to the industry. Still the blood feeding copepod parasite, Lepeophtheirus salmonis, remains the major challenge for ...
      Journal article
    • The Genomic HyperBrowser: an analysis web server for genome-scale data 

      Sandve, Geir Kjetil; Gundersen, Sveinung; Johansen, Morten; Glad, Ingrid Kristine; Gunathasan, Krishanthi; Holden, Lars; Holden, Marit; Liestøl, Knut; Nygård, Ståle; Nygaard, Vegard; Paulsen, Jonas; Rydbeck, Halfdan; Trengereid, Kai; Clancy, Trevor; Drabløs, Finn; Ferkingstad, Egil; Kalaš, Matúš; Lien, Tonje Gulbrandsen; Rye, Morten Beck; Frigessi, Arnoldo; Hovig, Johannes Eivind (Oxford University Press (OUP), 2013-04-30)
      The immense increase in availability of genomic scale datasets, such as those provided by the ENCODE and Roadmap Epigenomics projects, presents unprecedented opportunities for individual researchers to pose novel falsifiable ...
      Journal article
    • Genomic Insights into Methanotrophy: The Complete Genome Sequence of Methylococcus capsulatus (Bath) 

      Ward, Naomi; Larsen, Øivind; Sakwa, James; Bruseth, Live; Khouri, Hoda; Durkin, A. Scott; Dimitrov, George; Jiang, Lingxia; Scanlan, David; Kang, Katherine H.; Lewis, Matt; Nelson, Karen E.; Methé, Barbara; Wu, Martin; Heidelberg, John F.; Paulsen, Ian T.; Fouts, Derrick; Ravel, Jacques; Tettelin, Hervé; Ren, Qinghu; Read, Tim; DeBoy, Robert T.; Seshadri, Rekha; Salzberg, Steven L.; Jensen, Harald B.; Birkeland, Nils-Kåre; Nelson, William C.; Dodson, Robert J.; Grindhaug, Svenn Helge; Holt, Ingeborg; Eidhammer, Ingvar; Jonassen, Inge; Vanaken, Susan; Utterback, Terry; Feldblyum, Tamara V.; Fraser, Claire M.; Lillehaug, Johan; Eisen, Jonathan A. (Public Library of Science, 2004-09-21)
      Methanotrophs are ubiquitous bacteria that can use the greenhouse gas methane as a sole carbon and energy source for growth, thus playing major roles in global carbon cycles, and in particular, substantially reducing ...
      Journal articlePeer reviewed
    • Genomic Resources for Sea Lice: Analysis of ESTs and Mitochondrial Genomes 

      Yasuike, Motoshige; Leong, Jong; Jantzen, Stuart G.; Schalburg, Kristian R. von; Nilsen, Frank; Jones, Simon R. M.; Koop, Ben F. (Springer, 2011-07-12)
      Sea lice are common parasites of both farmed and wild salmon. Salmon farming constitutes an important economic market in North America, South America, and Northern Europe. Infections with sea lice can result in significant ...
      Peer reviewedJournal article
    • Genotyping errors in a calibrated DNA register: implications for identification of individuals 

      Haaland, Øystein; Glover, Kevin; Seliussen, Bjørghild Breistein; Skaug, Hans J. (BioMed Central, 2011-04-20)
      Background: The use of DNA methods for the identification and management of natural resources is gaining importance. In the future, it is likely that DNA registers will play an increasing role in this development. Microsatellite ...
      Peer reviewedJournal article
    • Geo-modeling and fluid flow simulation in paleokarst reservoirs 

      Furnée, Jon Petter Bjerkreim (The University of Bergen, 2015-06-30)
      This master thesis focuses on modeling and simulation of fluid flow in collapsed paleocave systems, also known as paleokarst. Petroleum reservoirs all around the world exhibit karst structures. The latest ones on the ...
      Master thesis
    • Geo-modelling of an exhumed reservoir cap rock succession, Utah, USA 

      Harneshaug, Anette (The University of Bergen, 2017-06-23)
      Carbon capture and storage (CCS) can potentially play an important role in mitigating global CO2 emissions. The storage sites must be understood in detail to ensure safe storage on a millennial time scale. Outcrop analogs ...
      Master thesis
    • Geo-modelling of paleokarst reservoirs - from cave-survey to geocellular paleokarst model 

      Ledsaak, Karina (The University of Bergen, 2016-11-20)
      Hydrocarbon reservoirs exhibiting features inherited from former karst processes acting on the reservoir rocks are relatively common worldwide. However, on the Norwegian continental shelf, paleokarst plays have only recently ...
      Master thesis