Blar i Faculty of Mathematics and Natural Sciences på tittel

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    • BioHackathon series in 2011 and 2012: penetration of ontology and linked data in life science domains 

      Katayama, Toshiaki; Wilkinson, Mark D.; Aoki-Kinoshita, Kiyoko F.; Kawashima, Shuichi; Yamamoto, Yasunori; Yamaguchi, Atsuko; Okamoto, Shinobu; Kawano, Shin; Kim, Jin-Dong; Wang, Yue; Wu, Hongyan; Kano, Yoshinobu; Ono, Hiromasa; Bono, Hidemasa; Kocbek, Simon; Aerts, Jan; Akune, Yukie; Antezana, Erick; Arakawa, Kazuharu; Aranda, Bruno; Baran, Joachim; Bolleman, Jerven; Bonnal, Raoul J. P.; Buttigieg, Pier Luigi; Campbell, Matthew P.; Chen, Yi-an; Chiba, Hirokazu; Cock, Peter J. A.; Cohen, K. Bretonnel; Constantin, Alexandru; Duck, Geraint; Dumontier, Michel; Fujisawa, Takatomo; Fujiwara, Toyofumi; Goto, Naohisa; Hoehndorf, Robert; Igarashi, Yoshinobu; Itaya, Hidetoshi; Ito, Maori; Iwasaki, Wataru; Kalaš, Matúš; Katoda, Takeo; Kim, Taehong; Kokubu, Anna; Komiyama, Yusuke; Kotera, Masaaki; Laibe, Camille; Lapp, Hilmar; Lütteke, Thomas; Marshall, M. Scott; Mori, Takaaki; Mori, Hiroshi; Morita, Mizuki; Murakami, Katsuhiko; Nakao, Mitsuteru; Narimatsu, Hisashi; Nishide, Hiroyo; Nishimura, Yosuke; Nyström-Persson, Johan; Ogishima, Soichi; Okamura, Yasunobu; Okuda, Shujiro; Oshita, Kazuki; Packer, Nicki H; Prins, Pjotr; Ranzinger, Rene; Rocca-Serra, Philippe; Sansone, Susanna; Sawaki, Hiromichi; Shin, Sung-Ho; Splendiani, Andrea; Strozzi, Francesco; Tadaka, Shu; Toukach, Philip; Uchiyama, Ikuo; Umezaki, Masahito; Vos, Rutger; Whetzel, Patricia L.; Yamada, Issaku; Yamasaki, Chisato; Yamashita, Riu; York, William S.; Zmasek, Christian M.; Kawamoto, Shoko; Takagi, Toshihisa (Peer reviewed; Journal article, 2014-02-05)
      Abstract The application of semantic technologies to the integration of biological data and the interoperability of bioinformatics analysis and visualization tools has been the common theme of a series of annual BioHackathons ...

    • Bioimage analysis workflows: community resources to navigate through a complex ecosystem [version 1; peer review: 2 approved] 

      Paul-Gilloteaux, Perrine; Tosi, Sébastien; Hériche, Jean-Karim; Gaignard, Alban; Ménager, Hervé; Marée, Raphaël; Baecker, Volker; Klemm, Anna; Kalaš, Matúš; Zhang, Chong; Miura, Kota; Colombelli, Julien (Journal article; Peer reviewed, 2021)
      Workflows are the keystone of bioimage analysis, and the NEUBIAS (Network of European BioImage AnalystS) community is trying to gather the actors of this field and organize the information around them. One of its most ...

    • Biological and ecological effects of Ligula intestinalis (Linnaeus, 1758) in a fish host Engraulicypris sardella (Gütter, 1868) from Tanzanian side of Lake Nyasa 

      Gabagambi, Nestory Peter (Doctoral thesis, 2020-10-23)
      The current thesis investigates the epidemiological, behavioral and evolutionary effects of the tapeworm Ligula intestinalis in the ‘Nyasa sardine’ (Engraulicypris sardella), an intermediate fish host, endemic to Lake ...

    • Biological availability of different commercially available histidine products in feed for Atlantic salmon smolt 

      Karlsen, Knut Martin (Master thesis, 2021-06-01)
      A comparative nutritional study with post-smolt Atlantic salmon (Salmo salar L.) was performed over six weeks to investigate similarities between three suppliers of synthetic His at two dietary levels in a formulated ...

    • Biological criteria for submergence of physostome (Atlantic salmon) and physoclist (Atlantic cod) fish in sea-cages 

      Korsøen, Øyvind Johan (Doctoral thesis, 2011-03-11)
      This thesis aims to describe behavioural responses and welfare parameters for the physostome Atlantic salmon and physoclist Atlantic cod when out of neutral buoyancy at different degrees and periods of time. The background ...

    • The biological indicators and temporal spawning habits of wrasse (Family: Labridae) from Sunnhordland 

      Matland, Emma Christine (Master thesis, 2015-06-15)
      The salmonid industry in Norway has grown exponentially. The greatest cost and danger to the salmonid industry are ectoparasitic sea lice (Lepeophtheirus salmonis). Sea lice attach to salmon causing damage and increasing ...

    • Biological transformation of Arctic dissolved organic matter in a NE Greenland fjord 

      Paulsen, Maria Lund; Müller, Oliver; Larsen, Aud; Møller, Eva Friis; Middelboe, Mathias; Sejr, Mikael Kristian; Stedmon, Colin A. (Peer reviewed; Journal article, 2018-12-07)
      Arctic waters are often enriched with terrestrial dissolved organic matter (DOM) characterized by having elevated visible wavelength fluorescence (commonly termed humic-like). Here, we have identified the sources of ...

    • Biologilærarar sine kunnskapar om arbeidsminnet 

      Hagen, Idunn Øye (Master thesis, 2022-06-01)
      Arbeidsminnet er ein funksjon i hjernen for å mentalt manipulere informasjon. Arbeidsminnet har avgrensa kapasitet og varigheit, noko som er sentralt i undervisningssamanheng fordi det påverkar elevar sine evner til å ...

    • Biology and distribution patterns of some deepwater demersal fishes in the North Atlantic, with special reference to Antimora rostrata A study related to the project “Patterns and Processes of the ecosystems of the northern Mid-Atlantic”, MAR-ECO, 2001-2008 

      Fossen, Inge (Doctoral thesis, 2007-06-19)
      The study seeks to increase our knowledge on deepwater demersal fish assemblages and the biological adaptations of Antimora rostrata. This widespread deep-living demersal teleost is essentially used as an example species. ...

    • Biology students at work: using blogs to investigate personal epistemologies 

      Hole, Torstein Nielsen; Velle, Gaute; Riese, Hanne; Raaheim, Arild; Simonelli, Anne-Laure (Peer reviewed; Journal article, 2018-12-24)
      This paper reports an investigation of biology students’ discussion of knowing in work placements, as accounted in blogs. Twenty-two blogs, containing 78 individual entries, written in conjunction with a work placement ...

    • Biomarker Discovery Using Statistical and Machine Learning Approaches on Gene Expression Data 

      Zhang, Xiaokang (Doctoral thesis, 2020-10-30)
      My PhD is affiliated with the dCod 1.0 project (https://www.uib.no/en/dcod): decoding the systems toxicology of Atlantic cod (Gadus morhua), which aims to better understand how cods adapt and react to the stressors in the ...

    • Biomass of Scyphozoan Jellyfish, and Its Spatial Association with 0-Group Fish in the Barents Sea 

      Eriksen, Elena; Prozorkevich, Dmitry; Trofimov, Aleksandr; Howell, Daniel (Peer reviewed; Journal article, 2012-03-22)
      An 0-group fish survey is conducted annually in the Barents Sea in order to estimate fish population abundance. Data on jellyfish by-catch have been recorded since 1980, although this dataset has never been analysed. In ...

    • Biomechanical analysis of groin related strength training exercises for injury prevention 

      Mo, Helena Cecilie (Master thesis, 2022-07-31)
      Purpose: Groin injuries in soccer are a widespread problem in sports medicine. One certain strength exercise, the Copenhagen adductor exercise, has shown an injury-preventing effect. But there are still many groin injuries, ...

    • Biomineralisering i kalde grotter: eksempler fra Nordland 

      Sæbø, Victoria (Master thesis, 2019-06-26)
      Samhandlingen mellom biologi og geologi i grotter er fortsatt lite forstått. Dette gjelder spesielt for biomineralisering; prosessen der mikroorganismer danner mineraler. Med bakgrunn i dette er det i denne oppgaven ...

    • Bioorthogonal Non-canonical Amino Acid Tagging Combined With Flow Cytometry for Determination of Activity in Aquatic Microorganisms 

      Lindivat, Mathilde; Larsen, Aud; Hess-Erga, Ole-Kristian; Bratbak, Gunnar; Hoell, Ingunn (Journal article; Peer reviewed, 2020)
      In this study, we have combined bioorthogonal non-canonical amino acid tagging (BONCAT) and flow cytometry (FCM) analysis, and we demonstrate the applicability of the method for marine prokaryotes. Enumeration of active ...

    • Bioprospecting North Atlantic microalgae with fast growth and high polyunsaturated fatty acid (PUFA) content for microalgae-based technologies 

      Steinrücken, Pia; Erga, Svein Rune; Mjøs, Svein Are; Kleivdal, Hans Torstein; Prestegard, Siv Kristin (Peer reviewed; Journal article, 2017-09)
      Microalgae are considered to be an important and sustainable alternative to fish oil as a source for the polyunsaturated fatty acids (PUFAs) eicosapentaenoic acid (EPA) and docosahexaenoic acid (DHA). Due to their health ...

    • BioSimulators: a central registry of simulation engines and services for recommending specific tools 

      Shaikh, Bilal; Smith, Lucian P; Vasilescu, Dan; Marupilla, Gnaneswara; Wilson, Michael; Agmon, Eran; Agnew, Henry; Andrews, Steven S; Anwar, Azraf; Beber, Moritz E; Bergmann, Frank T; Brooks, David; Brusch, Lutz; Calzone, Laurence; Choi, Kiri; Cooper, Joshua; Detloff, John; Drawert, Brian; Dumontier, Michel; Ermentrout, G Bard; Faeder, James R; Freiburger, Andrew P; Fröhlich, Fabian; Funahashi, Akira; Garny, Alan; Gennari, John H; Gleeson, Padraig; Goelzer, Anne; Haiman, Zachary; Hasenauer, Jan; Hellerstein, Joseph L; Hermjakob, Henning; Hoops, Stefan; Ison, Jon C; Jahn, Diego; Jakubowski, Henry V; Jordan, Ryann; Kalaš, Matúš; König, Matthias; Liebermeister, Wolfram; Sheriff, Rahuman S. Malik; Mandal, Synchon; McDougal, Robert; Medley, J Kyle; Mendes, Pedro; Müller, Robert; Myers, Chris J; Naldi, Aurelien; Nguyen, Tung V. N; Nickerson, David P; Olivier, Brett G; Patoliya, Drashti; Paulevé, Loïc; Petzold, Linda R; Priya, Ankita; Rampadarath, Anand K; Rohwer, Johann M; Saglam, Ali S; Singh, Dilawar; Sinha, Ankur; Snoep, Jacky; Sorby, Hugh; Spangler, Ryan; Starruß, Jörn; Thomas, Payton J; Van Niekerk, David; Weindl, Daniel; Zhang, Fengkai; Zhukova, Anna; Goldberg, Arthur P; Schaff, James C; Blinov, Michael L; Sauro, Herbert M; Moraru, Ion I; Karr, Jonathan R (Journal article; Peer reviewed, 2022)
      Computational models have great potential to accelerate bioscience, bioengineering, and medicine. However, it remains challenging to reproduce and reuse simulations, in part, because the numerous formats and methods for ...

    • Biosurfactants as Anti-Agglomerants for Gas Hydrates 

      Flatabø, Gudny Øyre (Master thesis, 2013-08-14)
      Gas hydrate blockages in petroleum pipelines are considered a major hazard in the petroleum industry, and with increasing water content and decreasing temperatures, a solution is sought upon that is both environmentally ...

    • The biosynthesis of phospholipids is linked to the cell cycle in a model eukaryote 

      Vitova, Milada; Lanta, Vojtech; Cizkova, Maria; Jakubec, Martin; Rise, Frode; Halskau, Øyvind; Bisova, Katerina; Furse, Samuel Robert (Journal article; Peer reviewed, 2021)
      The structural challenges faced by eukaryotic cells through the cell cycle are key for understanding cell viability and proliferation. We tested the hypothesis that the biosynthesis of structural lipids is linked to the ...

    • Biotic rescaling reveals importance of species interactions for variation in biodiversity responses to climate change 

      Vandvik, Vigdis; Skarpaas, Olav; Klanderud, Kari; Telford, Richard J.; Halbritter, Aud Helen; Goldberg, Deborah E (Journal article; Peer reviewed, 2020)
      Generality in understanding biodiversity responses to climate change has been hampered by substantial variation in the rates and even directions of response to a given change in climate. We propose that such context ...