• CREST – Classification Resources for Environmental Sequence Tags 

      Lanzén, Anders; Jørgensen, Steffen Leth; Huson, Daniel H.; Gorfer, Markus; Grindhaug, Svenn Helge; Jonassen, Inge; Øvreås, Lise; Urich, Tim (Peer reviewed; Journal article, 2012-11-08)
      Sequencing of taxonomic or phylogenetic markers is becoming a fast and efficient method for studying environmental microbial communities. This has resulted in a steadily growing collection of marker sequences, most notably ...
    • Functional analysis of metagenomes and metatranscriptomes using SEED and KEGG 

      Mitra, Suparna; Rupek, Paul; Richter, Daniel C.; Urich, Tim; Gilbert, Jack A.; Meyer, Folker; Wilke, Andreas; Huson, Daniel H. (Peer reviewed; Journal article, 2011-02-15)
      Background: Metagenomics is the study of microbial organisms using sequencing applied directly to environmental samples. Technological advances in next-generation sequencing methods are fueling a rapid increase in the ...
    • Simultaneous Assessment of Soil Microbial Community Structure and Function through Analysis of the Meta-Transcriptome 

      Urich, Tim; Lanzén, Anders; Qi, Ji; Huson, Daniel H.; Schleper, Christa Maria; Schuster, Stephan C. (Peer reviewed; Journal article, 2008-06-25)
      Background: Soil ecosystems harbor the most complex prokaryotic and eukaryotic microbial communities on Earth. Experimental approaches studying these systems usually focus on either the soil community’s taxonomic structure ...