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  • Decloud: an unsupervised deconvolution tool for building gene expression profiles 

    Kjørsvik, Øystein (The University of Bergen, 2018-05-29)
    Deconvolution is the process of decomposing a mixed signal into its originating elements. For my thesis I created a clustering application, named DeCloud, with the intent to replace the unsupervised clustering step in ...
    Master thesis
  • Naive and adapted utilization of the GPU for general purpose computing 

    Mjøs, Alexander (The University of Bergen, 2017)
    In this thesis we will see that adaptive utilization of the graphical processing unit (GPU) has much better performance than naive utilization, but it takes longer time to implement and requires more knowledge about ...
    Master thesis
  • Towards a multilevel model transformation engine 

    Johnsen, Leif Arne Røyrøy (The University of Bergen, 2017)
    Domain specific modelling languages (DSML) are usually defined through fixed level meta modelling tools such as EMF. While this is sufficient for defining languages that has no overlap with other languages, the approach ...
    Master thesis
  • Spiking Neural Networks for Pattern Recognition 

    Vestbøstad, Ketil Yddal (The University of Bergen, 2017)
    We have investigated an existing theoretical model for spiking neural networks, and based on this model we have implemented our own network. Then we have carried out experiments with this network, and compared its performance ...
    Master thesis
  • Reliable Asynchronous Communication in Distributed Systems 

    Johnsen, Espen (The University of Bergen, 2018-04-11)
    Master thesis
  • Disentangling genetic and epigenetic determinants of ultrafast adaptation 

    Gjuvsland, Arne Bjørke; Zörgö, Enikö Beatrix; Antony Samy, Jeevan Karloss; Stenberg, Simon; Demirsoy, Ibrahim H; Roque, Francisco; Maciaszczyk-Dziubinska, Ewa; Migocka, Magdalena; Alonso-Perez, Elisa; Zackrisson, Martin; Wysocki, Robert; Tamas, Markus J; Jonassen, Inge; Omholt, Stig William; Warringer, Jonas (EMBO Press, 2016)
    A major rationale for the advocacy of epigenetically mediated adaptive responses is that they facilitate faster adaptation to environmental challenges. This motivated us to develop a theoretical–experimental framework for ...
    Journal article
  • Algebraic Attack on Small Scale Variants of AES using Compressed Right Hand Sides 

    Indrøy, John Petter (The University of Bergen, 2018-04-07)
    The Advanced Encryption Standard is probably the most used symmetric encryption cipher in use today, which makes it particularly interesting for cryptanalysis. This thesis attacks smallscale variants of AES through a ...
    Master thesis
  • Graph modification problems: Beyond the known boundaries 

    Agrawal, Akanksha (The University of Bergen, 2017-11-17)
    Doctoral thesis
  • The Atlantic salmon genome provides insights into rediploidization 

    Lien, Sigbjørn; Koop, Ben F; Sandve, Simen Rød; Miller, Jason R.; Kent, Matthew Peter; Nome, Torfinn; Hvidsten, Torgeir Rhoden; Leong, Jong; Minkley, David R.; Zimin, Aleksey; Grammes, Fabian; Grove, Harald; Gjuvsland, Arne Bjørke; Walenz, Brian; Hermansen, Russell A.; von Schalburg, Kristian R.; Rondeau, Eric; Genova, Alex Di; Antony Samy, Jeevan Karloss; Vik, Jon Olav; Vigeland, Magnus Dehli; Caler, Lis; Grimholt, Unni; Jentoft, Sissel; Våge, Dag Inge; de Jong, Pieter J.; Moen, Thomas; Baranski, Matthew; Palti, Yniv; Smith, Douglas W.; Yorke, James A.; Nederbragt, Alexander J.; Tooming-Klunderud, Ave; Jakobsen, Kjetill Sigurd; Jiang, Xuanting; Fan, Dingding; Hu, Yan; Liberles, David A.; Vidal, Rodrigo; Iturra, Patricia; Jones, Steven J.M.; Jonassen, Inge; Maass, Alejandro; Omholt, Stig William; Davidson, William S (Nature Publishing Group, 2016-05)
    The whole-genome duplication 80 million years ago of the common ancestor of salmonids (salmonid-specific fourth vertebrate whole-genome duplication, Ss4R) provides unique opportunities to learn about the evolutionary fate ...
    Journal article
  • A Comparative Study on Distributed Storage and Erasure Coding Techniques Using Apache Hadoop Over NorNet Core 

    Vela, Maximiliano Matias (The University of Bergen, 2017)
    Both private and public sector organizations are constantly looking for new ways to keep their information safe and accessible at all times. Over the past few decades, replication has always been a reliable way to make ...
    Master thesis
  • A Comparative Analysis of MongoDB and Cassandra 

    Bhamra, Kavita (The University of Bergen, 2017-11)
    NoSQL is a group of database technologies that emerged due to the limitations of relational databases. The number of NoSQL technologies has increased over time to encompass hundreds of different technologies. The many NoSQL ...
    Master thesis
  • SBMLmod: a Python-based web application and web service for efficient data integration and model simulation 

    Schäuble, Sascha; Stavrum, Anne-Kristin; Bockwoldt, Mathias; Puntervoll, Pål; Heiland, Ines (BioMed Central, 2017-06-24)
    Background: Systems Biology Markup Language (SBML) is the standard model representation and description language in systems biology. Enriching and analysing systems biology models by integrating the multitude of available ...
    Journal article
  • Implementering og evaluering av en HL7 FHIR integrasjonsbuss for kommunikasjon mellom klientapplikasjoner og e-helsesystemer 

    Haugen, Karina Øverland (The University of Bergen, 2017-07-11)
    Bakgrunn: Den økende digitaliseringen av helsetjenestene krever at informasjonen i de elektroniske pasientjournalene er klinisk strukturerte ved hjelp av datastandarder og kliniske terminologier for riktig prosessering ...
    Master thesis
  • A model for optimal fleet composition of vessels for offshore wind farm maintenance 

    Gutierrez-Alcoba, Alejandro; Ortega, Gloria; Hendrix, Eligius M.T.; Halvorsen-Weare, Elin Espeland; Haugland, Dag (Elsevier, 2017)
    We present a discrete optimisation model that chooses an optimal fleet of vessels to support maintenance operations at Offshore Wind Farms (OFWs). The model is presented as a bi-level problem. On the first (tactical) level, ...
    Journal article
  • Parameterized complexity of the spanning tree congestion problem 

    Bodlaender, Hans L.; Fomin, Fedor; Golovach, Petr; Otachi, Yota; van Leeuwen, Erik Jan (Springer, 2012-09)
    We study the problem of determining the spanning tree congestion of a graph. We present some sharp contrasts in the parameterized complexity of this problem. First, we show that on apex-minor-free graphs, a general class ...
    Journal article
  • Parallel Matching and Clustering Algorithms on GPUs 

    Naim, Md. (The University of Bergen, 2017-06-17)
    Doctoral thesis
  • On Stable Marriages and Greedy Matchings 

    Manne, Fredrik; Naim, Md.; Lerring, Håkon; Halappanavar, Mahantesh (SIAM, 2016)
    Research on stable marriage problems has a long and mathematically rigorous history, while that of exploiting greedy matchings in combinatorial scientific computing is a younger and less developed research field. We consider ...
    Conference object
  • Community Detection on the GPU 

    Naim, Md.; Manne, Fredrik; Halappanavar, Mahantesh; Tumeo, Antonino (IEEE, 2017)
    We present and evaluate a new GPU algorithm based on the Louvain method for community detection. Our algorithm is the first for this problem that parallelizes the access to individual edges. In this way we can fine tune ...
    Conference object
  • Optimizing Approximate Weighted Matching on Nvidia Kepler K40 

    Naim, Md.; Manne, Fredrik; Halappanavar, Mahantesh; Tumeo, Antonino; Langguth, Johannes (IEEE, 2018)
    Matching is a fundamental graph problem with numerous applications in science and engineering. While algorithms for computing optimal matchings are difficult to parallelize, approximation algorithms on the other hand ...
    Conference object
  • VaulteR - A pipeline for vault associated RNA detection from RNA- sequencing 

    Gao, Yue (The University of Bergen, 2017-10-06)
    Vaults are highly conserved ribonucleoprotein complexes of unknown function. They have so far been found to be present in high numbers among higher eukaryotes including mammals, amphibians, and avians, as well as lower ...
    Master thesis

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