Now showing items 1-6 of 6

    • Comparative Visualization of Protein Secondary Structures 

      Kocincova, Lucia; Jaresova, Miroslava; Byska, Jan; Parulek, Julius; Hauser, Helwig; Kozlikova, Barbora (BioMed Central, 2017-02-15)
      Background: Protein function is determined by many factors, namely by its constitution, spatial arrangement, and dynamic behavior. Studying these factors helps the biochemists and biologists to better understand the protein ...
      Journal article
    • Continuous Levels-of-Detail and Visual Abstraction for Seamless Molecular Visualization 

      Parulek, Julius; Jönsson, Daniel; Ropinski, Timo; Bruckner, Stefan; Ynnerman, Anders; Viola, Ivan (Wiley, 2014-05-06)
      Molecular visualization is often challenged with rendering of large molecular structures in real time. We introduce a novel approach that enables us to show even large protein complexes. Our method is based on the ...
      Journal article
    • Interactive Exploration of Ligand Transportation through Protein Tunnels 

      Furmanova, Katarina; Jaresova, Miroslava; Byska, Jan; Jurcik, Adam; Parulek, Julius; Hauser, Helwig; Kozlikova, Barbora (BioMed Central, 2017-02-15)
      Background: Protein structures and their interaction with ligands have been in the focus of biochemistry and structural biology research for decades. The transportation of ligand into the protein active site is often complex ...
      Journal article
    • Interactively illustrating polymerization using three-level model fusion 

      Kolesar, Ivan; Parulek, Julius; Viola, Ivan; Bruckner, Stefan; Stavrum, Anne-Kristin; Hauser, Helwig (BioMed Central, 2014-10-14)
      Background: Research in cell biology is steadily contributing new knowledge about many aspects of physiological processes, both with respect to the involved molecular structures as well as their related function. Illustrations ...
      Journal article
    • Visual Cavity Analysis in Molecular Simulations 

      Parulek, Julius; Turkay, Cagatay; Reuter, Nathalie; Viola, Ivan (BioMed Central, 2013-11-12)
      Molecular surfaces provide a useful mean for analyzing interactions between biomolecules; such as identification and characterization of ligand binding sites to a host macromolecule. We present a novel technique, which ...
      Journal article
    • Visualization of Biomolecular Structures: State of the Art Revisited 

      Kozlíková, Barbora; Krone, Michael; Falk, Martin; Lindow, Norbert; Baaden, Marc; Baum, Daniel S.; Viola, Ivan; Parulek, Julius; Hege, Hans-Christian (Wiley, 2016-11-18)
      Structural properties of molecules are of primary concern in many fields. This report provides a comprehensive overview on techniques that have been developed in the fields of molecular graphics and visualization with a ...
      Journal article