• BioXSD: the common data-exchange format for everyday bioinformatics web services 

      Kalaš, Matúš; Puntervoll, Pål; Joseph, Alexandre; Bartaševičiūtė, Edita; Töpfer, Armin; Venkataraman, Prabakar; Pettifer, Steve; Bryne, Jan Christian; Ison, Jon; Blanchet, Christophe; Rapacki, Kristoffer; Jonassen, Inge (Peer reviewed; Journal article, 2010)
      Motivation: The world-wide community of life scientists has access to a large number of public bioinformatics databases and tools, which are developed and deployed using diverse technologies and designs. More and more of ...
    • Data partitioning enables the use of standard SOAP Web Services in genome-scale workflows 

      Sztromwasser, Paweł; Puntervoll, Pål; Petersen, Kjell (Peer reviewed; Journal article, 2011)
      Biological databases and computational biology tools are provided by research groups around the world, and made accessible on the Web. Combining these resources is a com- mon practice in bioinformatics, but integration of ...
    • Direct data transfer between SOAP web services in Orchestration 

      Subramanian, Sattanathan; Sztromwasser, Paweł; Puntervoll, Pål; Petersen, Kjell (Chapter; Peer reviewed, 2012)
      In scientific data analysis, workflows are used to integrate and coordinate resources such as databases and tools. Workflows are normally executed by an orchestrator that invokes component services and mediates data transport ...
    • SBMLmod: a Python-based web application and web service for efficient data integration and model simulation 

      Schäuble, Sascha; Stavrum, Anne-Kristin; Bockwoldt, Mathias; Puntervoll, Pål; Heiland, Ines (Peer reviewed; Journal article, 2017-06-24)
      Background: Systems Biology Markup Language (SBML) is the standard model representation and description language in systems biology. Enriching and analysing systems biology models by integrating the multitude of available ...