Browsing Bergen Open Research Archive by Author "Frank, Anna-Simone Josefine"

Now showing items 1-4 of 4

    • Macrophage phenotype transitions in a stochastic gene-regulatory network model 

      Frank, Anna-Simone Josefine; Larripa, Kamila; Ryu, Hwayeon; Röblitz, Susanna (Journal article; Peer reviewed, 2023)
      Polarization is the process by which a macrophage cell commits to a phenotype based on external signal stimulation. To know how this process is affected by random fluctuations and events within a cell is of utmost importance ...

    • Population dynamic regulators in an empirical predator-prey system 

      Frank, Anna-Simone Josefine; Subbey, S.; Kobras, Melanie; Gjøsæter, H. (Journal article; Peer reviewed, 2021)
      Capelin (Mallotus villosus) is a short-lived (1–4 years) fish species, that plays a crucial role by dominating the intermediate trophic level in the Barents Sea. Several episodes of extreme biomass decline (collapse) have ...

    • Spectral clustering of Markov chain transition matrices with complex eigenvalues 

      Frank, Anna-Simone Josefine; Sikorski, Alexander; Röblitz, Susanna (Journal article; Peer reviewed, 2024)
      The Robust Perron Cluster Analysis (PCCA+) has become a popular spectral clustering algorithm for coarse-graining transition matrices of nearly decomposable Markov chains with transition states. Originally developed for ...

    • Uncovering dynamic structures within cyclic attractors of asynchronous Boolean networks with spectral clustering 

      Yousefian, Maryam; Tonello, Elisa; Frank, Anna-Simone Josefine; Siebert, Heike; Röblitz, Susanna (Journal article; Peer reviewed, 2024)
      Boolean models provide an intuitive framework for the investigation of complex biological networks. Dynamics that implement asynchronous update rules, in particular, can help embody the complexity arising from non-deterministic ...