Browsing Bergen Open Research Archive by Author "Rehmsmeier, Marc"
Now showing items 1-3 of 3
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Gnocis: An integrated system for interactive and reproducible analysis and modelling of cis-regulatory elements in Python 3
Bredesen, Bjørn André; Rehmsmeier, Marc (Journal article; Peer reviewed, 2022-09-09)Gene expression is regulated through cis-regulatory elements (CREs), among which are promoters, enhancers, Polycomb/Trithorax Response Elements (PREs), silencers and insulators. Computational prediction of CREs can be ... -
MOCCA: a fexible suite for modelling DNA sequence motif occurrence combinatorics
Bredesen, Bjørn André; Rehmsmeier, Marc (Journal article; Peer reviewed, 2021)Background Cis-regulatory elements (CREs) are DNA sequence segments that regulate gene expression. Among CREs are promoters, enhancers, Boundary Elements (BEs) and Polycomb Response Elements (PREs), all of which are ... -
Precrec: fast and accurate precision-recall and ROC curve calculations in R
Saito, Takaya; Rehmsmeier, Marc (Peer reviewed; Journal article, 2017)The precision–recall plot is more informative than the ROC plot when evaluating classifiers on imbalanced datasets, but fast and accurate curve calculation tools for precision–recall plots are currently not available. We ...