• Parameterized complexity of secluded connectivity problems 

      Fomin, Fedor; Golovach, Petr; Karpov, Nikolay; Kulikov, Alexander S (Peer reviewed; Journal article, 2015)
      The Secluded Path problem introduced by Chechik et al. in [ESA 2013] models a situation where a sensitive information has to be transmitted between a pair of nodes along a path in a network. The measure of the quality of ...
    • The Proteomics Identifications database: 2010 update 

      Vizcaíno, Juan Antonio; Côté, Richard G.; Reisinger, Florian; Barsnes, Harald; Foster, JM; Rameseder, Jonathan; Hermjakob, Henning; Martens, Lennart (Peer reviewed; Journal article, 2009-11-11)
      The Proteomics Identifications database (PRIDE, http://www.ebi.ac.uk/pride) at the European Bioinformatics Institute has become one of the main repositories of mass spectrometry-derived proteomics data. For the last 2 ...
    • Quick but odd growth of cacti 

      Kolay, Sudeshna; Lokshtanov, Daniel; Panolan, Fahad; Saurabh, Saket (Peer reviewed; Journal article, 2015)
      Let F be a family of graphs. Given an input graph G and a positive integer k, testing whether G has a k-sized subset of vertices S, such that G\S belongs to F, is a prototype vertex deletion problem. These type of problems ...
    • Subexponential-time parameterized algorithm for Steiner tree on planar graphs 

      Pilipczuk, Marcin; Pilipczuk, Michal Pawel; van Leeuwen, Erik Jan; Sankowski, Piotr (Peer reviewed; Journal article, 2013)
      The well-known bidimensionality theory provides a method for designing fast, subexponential-time parameterized algorithms for a vast number of NP-hard problems on sparse graph classes such as planar graphs, bounded genus ...
    • Techniques in parameterized algorithm design 

      Sloper, Christian (Doctoral thesis, 2006-03-06)
      In this thesis we give a novel classification of techniques for designing parameterized algorithms, together with research publications applying these techniques, in particular Crown Decompositions, to various problems. ...
    • Tight bounds for parameterized complexity of Cluster Editing 

      Fomin, Fedor; Kratsch, Stefan; Pilipczuk, Marcin; Pilipczuk, Michal Pawel; Villanger, Yngve (Peer reviewed; Journal article, 2013)
      In the Correlation Clustering problem, also known as Cluster Editing, we are given an undirected graph G and a positive integer k; the task is to decide whether G can be transformed into a cluster graph, i.e., a disjoint ...
    • Towards Correct Modelling and Model Transformation in DPF 

      Wang, Xiaoliang (Doctoral thesis, 2016-06-14)
      Model-driven engineering (MDE) is a model-centric software development methodology. It promotes models as first-class entities in software de- velopment. Models are used to represent software along software devel- opment ...
    • Variants of plane diameter completion 

      Golovach, Petr; Requile, Clement; Thilikos, Dimitrios M. (Peer reviewed; Journal article, 2015)
      The Plane Diameter Completion problem asks, given a plane graph G and a positive integer d, if it is a spanning subgraph of a plane graph H that has diameter at most d. We examine two variants of this problem where the ...