• Discriminating between surfaces of peripheral membrane proteins and reference proteins using machine learning algorithms 

      Miao, Fengming (Master thesis, 2019-04-05)
      In biology, the cell membrane is an important component of a cell and usually works as a “fence” to distinguish the inside and outside of a cell. The key role is to protect the cells from being interfered by their surroundings ...
    • Disentangling genetic and epigenetic determinants of ultrafast adaptation 

      Gjuvsland, Arne Bjørke; Zörgö, Enikö Beatrix; Antony Samy, Jeevan Karloss; Stenberg, Simon; Demirsoy, Ibrahim H; Roque, Francisco; Maciaszczyk-Dziubinska, Ewa; Migocka, Magdalena; Alonso-Perez, Elisa; Zackrisson, Martin; Wysocki, Robert; Tamas, Markus J; Jonassen, Inge; Omholt, Stig William; Warringer, Jonas (Peer reviewed; Journal article, 2016)
      A major rationale for the advocacy of epigenetically mediated adaptive responses is that they facilitate faster adaptation to environmental challenges. This motivated us to develop a theoretical–experimental framework for ...
    • Diverse Collections in Matroids and Graphs 

      Fomin, Fedor; Golovach, Petr; Panolan, Fahad; Philip, Geevarghese; Saurabh, Saket (Journal article; Peer reviewed, 2021)
      We investigate the parameterized complexity of finding diverse sets of solutions to three fundamental combinatorial problems, two from the theory of matroids and the third from graph theory. The input to the Weighted Diverse ...
    • Diverse Pairs of Matchings 

      Fomin, Fedor; Golovach, Petr; Jaffke, Lars; Philip, Geevarghese; Sagunov, Danil (Journal article; Peer reviewed, 2020)
      We initiate the study of the Diverse Pair of (Maximum/ Perfect) Matchings problems which given a graph G and an integer k, ask whether G has two (maximum/perfect) matchings whose symmetric difference is at least k. Diverse ...
    • Diversity of solutions: An exploration through the lens of fixed-parameter tractability theory 

      Baste, Julien; Fellows, Michael Ralph; Jaffke, Lars; Masařík, Tomáš; Oliveira, Mateus De Oliveira; Philip, Geevarghese; Rosamond, Frances (Journal article; Peer reviewed, 2022)
      When modeling an application of practical relevance as an instance of a combinatorial problem X, we are often interested not merely in finding one optimal solution for that instance, but in finding a sufficiently diverse ...
    • Do Disease Stories Need a Hero? Effects of Human Protagonists on a Narrative Visualization about Cerebral Small Vessel Disease 

      Mittenentzwei, S.; Weiß, V.; Schreiber, S.; Garrison, Laura Ann; Bruckner, Stefan; Pfister, M.; Preim, B.; Meuschke, M. (Journal article; Peer reviewed, 2023)
      Authors use various media formats to convey disease information to a broad audience, from articles and videos to interviews or documentaries. These media often include human characters, such as patients or treating physicians, ...
    • A domain-specific dialect for financial-economic calculations using reactive programming 

      Marheim, Christian Lundekvam (Master thesis, 2017-08-19)
      This thesis investigates to what extent reactive programming is suited for the implementation of systems that support banks in providing financial-economic advice to their private customers. To this end, we built a small ...
    • Domain-Specific Languages for Composable Editor Plugins 

      Kats, Lennart C. L.; Kalleberg, Karl Trygve; Visser, Eelco (Peer reviewed; Journal article, 2010-09-17)
      Modern IDEs increase developer productivity by incorporating many different kinds of editor services. These can be purely syntactic, such as syntax highlighting, code folding, and an outline for navigation; or they can be ...
    • Drum Analysis 

      Riskedal, Espen (Master thesis, 2002)
      This thesis studies drumloops, and the possibility to separate the different drumsounds from each other. Drum onsets and the detection of these are thoroughly discussed. Different approaches for detection and separation ...
    • Dynamic Content Manage for E-Learning 

      Tekle, Kidane Mebrahtu (Master thesis, 2008-11-18)
    • Dynamic Content Manager for E-Learning 

      Bottu, Anil Kumar (Master thesis, 2008-11-18)
      Dynamic content manager for E-Learning project is developed as the partial fulfillment of master studies under the supervision of yngve lamo Ph.D and Khalid Azim Mughal Ph.D.
    • Dynamic Presentation Generator 2.0 Utvikling av ny dynamisk presentasjonsgenerator og presentasjonsmønsterspesifikasjon. 

      Sebak, Bjørn Christian (Master thesis, 2008-10-13)
      Denne masteroppgaven er en del av JAva FjernUndervisningsprosjektet (JAFU) på Institutt for Informatikk ved Universitetet i Bergen. Formålet med dette prosjektet er først og fremst å kunne tilby nettbasert undervisning ...
    • Dynamics-function relationship in the catalytic domains of N-terminal acetyltransferases 

      Abboud, Angèle; Bedoucha, Pierre; Byska, Jan; Arnesen, Thomas; Reuter, Nathalie (Journal article; Peer reviewed, 2020)
      N-terminal acetyltransferases (NATs) belong to the superfamily of acetyltransferases. They are enzymes catalysing the transfer of an acetyl group from acetyl coenzyme A to the N-terminus of polypeptide chains. N-terminal ...
    • Ecological Momentary Assessment in Internet-Delivered Psychological Treatments using Wearable Technology 

      Haneborg, Jonas Øverland; Sundt, Tellev (Master thesis, 2022-06-01)
      The growing prevalence of mental health problems is a global concern. Current psychological treatments are effective for a wide range of mental health problems. Yet, treatments today fall short with regards to scalability ...
    • EDAM-bioimaging: the ontology of bioimage informatics operations, topics, data, and formats (update 2020) 

      Kalaš, Matúš; Plantard, Laure; Lindblad, Joakim; Jones, Martin; Sladoje, Nataša; Kirschmann, Moritz A.; Chessel, Anatole; Scholz, Leandro; Rössler, Fabianne; Nicolás Sáenz, Laura; Gómez de Mariscal, Estibaliz; Bogovic, John; Dufour, Alexandre; Heiligenstein, Xavier; Waithe, Dominic; Domart, Marie-Charlotte; Karreman, Matthia; Van de Plas, Raf; Haase, Robert; Hörl, David; Paavolainen, Lassi; Vrhovac Madunić, Ivana; Karaica, Dean; Muñoz-Barrutia, Arrate; Sampaio, Paula; Sage, Daniel; Munck, Sebastian; Golani, Ofra; Moore, Josh; Levet, Florian; Ison, Jon; Gaignard, Alban; Ménager, Hervé; Zhang, Chong; Miura, Kota; Colombelli, Julien; Paul-Gilloteaux, Perrine (Others, 2020)
      EDAM is a well-established ontology of operations, topics, types of data, and data formats that are used in bioinformatics and its neighbouring fields [1,2] . EDAM-bioimaging is an extension of EDAM dedicated to bioimage ...
    • EDAM: an ontology of bioinformatics operations, types of data and identifiers, topics and formats 

      Ison, Jon; Kalaš, Matúš; Jonassen, Inge; Bolser, Dan; Uludag, Mahmut; McWilliam, Hamish; Malone, James; Lopez, Rodrigo; Pettifer, Steve; Rice, Peter (Peer reviewed; Journal article, 2013)
      Motivation: Advancing the search, publication and integration of bioinformatics tools and resources demands consistent machine-understandable descriptions. A comprehensive ontology allowing such descriptions is therefore ...
    • EDAM: the bioscientific data analysis ontology (update 2021) [version 1; not peer reviewed] 

      Black, Melissa; Lamothe, Lucie; Eldakroury, Hager; Kierkegaard, Mads; Priya, Ankita; Machinda, Anne; Singh Khanduja, Uttam; Patoliya, Drashti; Rathi, Rashika; Che Nico, Tawah Peggy; Umutesi, Gloria; Blankenburg, Claudia; Op, Anita; Chieke, Precious; Babatunde, Omodolapo; Laurie, Steve; Neumann, Steffen; Schwämmle, Veit; Kuzmin, Ivan; Hunter, Chris; Karr, Jonathan; Ison, Jon; Gaignard, Alban; Brancotte, Bryan; Ménager, Hervé; Kalaš, Matúš (Others, 2021)
      EDAM [1] is a domain ontology of data analysis and data management in bio- and other sciences, and science-based applications. It comprises concepts related to analysis, modelling, optimisation, and data life-cycle. ...
    • EDAM: the ontology of bioinformatics operations, topics, data, and formats (update 2020) 

      Kalaš, Matúš; Ménager, Hervé; Gaignard, Alban; Schwämmle, Veit; Ison, Jon (Others, 2020)
      Project website: http://edamontology.org Source code: https://github.com/edamontology/edamontology License: CC BY-SA 4.0 EDAM is an ontology of well-established, familiar concepts that are prevalent within bioinformatics, ...
    • Editing to Eulerian Graphs 

      Dabrowski, Konrad K.; Golovach, Petr; van' t Hof, Pim; Paulusma, Daniël (Journal article; Peer reviewed, 2014)
      We investigate the problem of modifying a graph into a connected graph in which the degree of each vertex satisfies a prescribed parity constraint. Let ea, ed and vd denote the operations edge addition, edge deletion and ...