• Gnocis: An integrated system for interactive and reproducible analysis and modelling of cis-regulatory elements in Python 3 

      Bredesen, Bjørn André; Rehmsmeier, Marc (Journal article; Peer reviewed, 2022-09-09)
      Gene expression is regulated through cis-regulatory elements (CREs), among which are promoters, enhancers, Polycomb/Trithorax Response Elements (PREs), silencers and insulators. Computational prediction of CREs can be ...
    • Going Far from Degeneracy 

      Fomin, Fedor; Golovach, Petr; Lokshtanov, Daniel; Panolan, Fahad; Saurabh, Saket; Zehavi, Meirav (Journal article; Peer reviewed, 2020)
      An undirected graph $G$ is $d$-degenerate if every subgraph of $G$ has a vertex of degree at most $d$. By the classical theorem of Erdös and Gallai from 1959, every graph of degeneracy $d>1$ contains a cycle of length at ...
    • Going Far From Degeneracy 

      Fomin, Fedor; Golovach, Petr; Lokshtanov, Daniel; Panolan, Fahad; Saurabh, Saket; Zehavi, Meirav (Peer reviewed; Journal article, 2019-09-06)
      An undirected graph G is d-degenerate if every subgraph of G has a vertex of degree at most d. By the classical theorem of Erd\H{o}s and Gallai from 1959, every graph of degeneracy d>1 contains a cycle of length at least ...
    • Gold functions and switched cube functions are not 0-extendable in dimension n > 5 

      Beierle, Christof; Carlet, Claude Michael (Journal article; Peer reviewed, 2023)
      In the independent works by Kalgin and Idrisova and by Beierle, Leander and Perrin, it was observed that the Gold APN functions over \(\mathbb {F}_{2^5}\) give rise to a quadratic APN function in dimension 6 having maximum ...
    • Graph Algebras and Derived Graph Operations 

      Wolter, Uwe; Truong, Tam T. (Journal article, 2023)
      We revise our former definition of graph operations and correspondingly adapt the construction of graph term algebras. As a first contribution to a prospective research field, Universal Graph Algebra, we generalize some ...
    • A Graph Feature Auto-Encoder for the Prediction of Unobserved Node Features on Biological Networks 

      Hasibi, Ramin; Michoel, Tom (Journal article; Peer reviewed, 2021)
      Background Molecular interaction networks summarize complex biological processes as graphs, whose structure is informative of biological function at multiple scales. Simultaneously, omics technologies measure the variation ...
    • Graph modification problems: Beyond the known boundaries 

      Agrawal, Akanksha (Doctoral thesis, 2017-11-17)
    • Graphical Computing Solution for Industrial Plant Engineering 

      Lima, Marcelo Furtado (Master thesis, 2017-06-21)
      When preparing an engineering operation on an industrial plant, reliable and updated models of the plant must be available for correct decisions and planning. However, especially in the case of offshore oil and gas ...
    • Grein. A New Non-Linear Cryptoprimitive 

      Thorsen, Ole Rydland (Master thesis, 2013-12-10)
      In this thesis, we will study a new stream cipher, Grein, and a new cryptoprimitive used in this cipher. The second chapter gives a brief introduction to cryptography in general. The third chapter looks at stream ciphers ...
    • Guaranteeing Resource Bounds for Component Software 

      Truong, Anh Hoang (Journal article, 2005-06-15)
      Component software is software that has been assembled from various pieces of standardized, reusable computer programs, so-called components. Executing component software creates instances of these components. For several ...
    • Guarding the First Order: The Rise of AES Maskings 

      Askeland, Amund; Dhooghe, S.; Petkova-Nikova, Svetla Iordanova; Rijmen, Vincent Stefaan; Zhang, Zhenda (Journal article; Peer reviewed, 2023)
      We provide three first-order hardware maskings of the AES, each allowing for a different trade-off between the number of shares and the number of register stages. All maskings use a generalization of the changing of the ...
    • Hard Mathematical Problems in Cryptography and Coding Theory 

      Varadharajan, Srimathi (Doctoral thesis, 2020-04-28)
      In this thesis, we are concerned with certain interesting computationally hard problems and the complexities of their associated algorithms. All of these problems share a common feature in that they all arise from, or have ...
    • Hash functions in Cryptography 

      Grah, Joseph Sterling (Master thesis, 2008)
      This thesis is concerned with giving both an overview of the application of hash functions in cryptography and a presentation of today's standard cryptographic hash functions. Cryptographic hash functions are a valuable ...
    • Hashfunksjoner for bruk i Digitale Signaturer 

      Solvik, Jan Anders (Master thesis, 1995)
    • Hierarchical clusterings of unweighted graphs 

      Høgemo, Svein; Paul, Christophe; Telle, Jan Arne (Journal article; Peer reviewed, 2020)
      We study the complexity of finding an optimal hierarchical clustering of an unweighted similarity graph under the recently introduced Dasgupta objective function. We introduce a proof technique, called the normalization ...
    • A Hierarchical Splitting Scheme to Reveal Insight into Highly Self-Occluded Integral Surfaces 

      Brambilla, Andrea; Viola, Ivan; Hauser, Helwig (Peer reviewed; Journal article, 2012)
      In flow visualization, integral surfaces are of particular interest for their ability to describe trajectories of massless particles. In areas of swirling motion, integral surfaces can become very complex and difficult to ...
    • High-Dimensional Bayesian Network Inference From Systems Genetics Data Using Genetic Node Ordering 

      Wang, Lingfei; Audenaert, Pieter; Michoel, Tom Luk Robert (Journal article; Peer reviewed, 2019)
      Studying the impact of genetic variation on gene regulatory networks is essential to understand the biological mechanisms by which genetic variation causes variation in phenotypes. Bayesian networks provide an elegant ...
    • High-performance design patterns for modern Fortran 

      Haveraaen, Magne; Morris, Karla; Rouson, Damian; Radhakrishnan, Hari; Carson, Clayton (Peer reviewed; Journal article, 2015)
      This paper presents ideas for using coordinate-free numerics in modern Fortran to achieve code flexibility in the partial differential equation (PDE) domain. We also show how Fortran, over the last few decades, has changed ...
    • Highlights from the Eighth International Society for Computational Biology (ISCB) Student Council Symposium 2012 

      Goncearenco, Alexander; Grynberg, Priscila; Botvinnik, Olga B.; Macintyre, Geoff; Abeel, Thomas (Peer reviewed; Journal article, 2012-12-14)
      Abstract The report summarizes the scientific content of the annual symposium organized by the Student Council of the International Society for Computational Biology (ISCB) held in conjunction with the Intelligent Systems ...