• EDAM: the ontology of bioinformatics operations, topics, data, and formats (update 2020) 

      Kalaš, Matúš; Ménager, Hervé; Gaignard, Alban; Schwämmle, Veit; Ison, Jon (Others, 2020)
      Project website: http://edamontology.org Source code: https://github.com/edamontology/edamontology License: CC BY-SA 4.0 EDAM is an ontology of well-established, familiar concepts that are prevalent within bioinformatics, ...
    • Numerical Method for 3D Quantification of Glenoid Bone Loss 

      Malyshev, Alexander; Noreika, Algirdas (Journal article; Peer reviewed, 2023)
      Let a three-dimensional ball intersect a three-dimensional polyhedron given by its triangulated boundary with outward unit normals. We propose a numerical method for approximate computation of the intersection volume by ...
    • Perspectives on automated composition of workflows in the life sciences [version 1; peer review: 2 approved] 

      Lamprecht, Anna-Lena; Palmblad, Magnus; Ison, Jon; Schwämmle, Veit; Al Manir, Mohammad Sadnan; Altintas, Ilkay; Baker, Christopher J. O.; Ben Hadj Amor, Ammar; Capella-Gutierrez, Salvador; Charonyktakis, Paulos; Crusoe, Michael R.; Gil, Yolanda; Goble, Carole; Griffin, Timothy J.; Groth, Paul; Ienasescu, Hans; Jagtap, Pratik; Kalaš, Matúš; Kasalica, Vedran; Khanteymoori, Alireza; Kuhn, Tobias; Mei, Hailiang; Ménager, Hervé; Möller, Steffen; Richardson, Robin A.; Robert, Vincent; Soiland-Reyes, Stian; Stevens, Robert; Szaniszlo, Szoke; Verberne, Suzan; Verhoeven, Aswin; Wolstencroft, Katherine (Journal article; Peer reviewed, 2021)
      Scientific data analyses often combine several computational tools in automated pipelines, or workflows. Thousands of such workflows have been used in the life sciences, though their composition has remained a cumbersome ...