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thermo-msf-parser: An Open Source Java Library to Parse and Visualize Thermo Proteome Discoverer msf Files

Colaert, Niklaas; Barsnes, Harald; Vaudel, Marc; Helsens, Kenny; Timmerman, Evy; Sickmann, Albert; Gevaert, Kris; Martens, Lennart
Peer reviewed, Journal article
Accepted version
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https://hdl.handle.net/1956/16679
Utgivelsesdato
2011
Metadata
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Samlinger
  • Department of Biomedicine [606]
Originalversjon
https://doi.org/10.1021/pr2005154
Sammendrag
The Thermo Proteome Discoverer program integrates both peptide identification and quantification into a single workflow for peptide-centric proteomics. Furthermore, its close integration with Thermo mass spectrometers has made it increasingly popular in the field. Here, we present a Java library to parse the msf files that constitute the output of Proteome Discoverer. The parser is also implemented as a graphical user interface allowing convenient access to the information found in the msf files, and in Rover, a program to analyze and validate quantitative proteomics information. All code, binaries, and documentation is freely available at http://thermo-msf-parser.googlecode.com.
Utgiver
American Chemical Society
Tidsskrift
Journal of Proteome Research
Opphavsrett
Copyright 2011 American Chemical Society

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