Blar i Department of Biological and Medical Psychology på forfatter "Hamzeiy, Hamid"
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MaxDIA enables library-based and library-free data-independent acquisition proteomics
Sinitcyn, Pavel; Hamzeiy, Hamid; Salinas Soto, Favio; Itzhak, Daniel; McCarthy, Frank; Wichmann, Christoph; Steger, Martin; Ohmayer, Uli; Distler, Ute; Kaspar-Schoenefeld, Stephanie; Prianichnikov, Nikita; Yılmaz, Şule; Rudolph, Jan Daniel; Tenzer, Stefan; Perez-Riverol, Yasset; Nagaraj, Nagarjuna; Humphrey, Sean J.; Cox, Juergen (Journal article; Peer reviewed, 2021)MaxDIA is a software platform for analyzing data-independent acquisition (DIA) proteomics data within the MaxQuant software environment. Using spectral libraries, MaxDIA achieves deep proteome coverage with substantially ... -
Perseus plugin “Metis” for metabolic-pathway-centered quantitative multi-omics data analysis for static and time-series experimental designs
Hamzeiy, Hamid; Ferretti, Daniela; Robles, Maria S.; Cox, Juergen (Journal article; Peer reviewed, 2022)We introduce Metis, a new plugin for the Perseus software aimed at analyzing quantitative multi-omics data based on metabolic pathways. Data from different omics types are connected through reactions of a genome-scale ...