Blar i Department of Biological and Medical Psychology på forfatter "Rudolph, Jan Daniel"
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MaxDIA enables library-based and library-free data-independent acquisition proteomics
Sinitcyn, Pavel; Hamzeiy, Hamid; Salinas Soto, Favio; Itzhak, Daniel; McCarthy, Frank; Wichmann, Christoph; Steger, Martin; Ohmayer, Uli; Distler, Ute; Kaspar-Schoenefeld, Stephanie; Prianichnikov, Nikita; Yılmaz, Şule; Rudolph, Jan Daniel; Tenzer, Stefan; Perez-Riverol, Yasset; Nagaraj, Nagarjuna; Humphrey, Sean J.; Cox, Juergen (Journal article; Peer reviewed, 2021)MaxDIA is a software platform for analyzing data-independent acquisition (DIA) proteomics data within the MaxQuant software environment. Using spectral libraries, MaxDIA achieves deep proteome coverage with substantially ... -
A network module for the perseus software for computational proteomics facilitates proteome interaction graph analysis
Rudolph, Jan Daniel; Cox, Jürgen (Peer reviewed; Journal article, 2019-04-01)Proteomics data analysis strongly benefits from not studying single proteins in isolation but taking their multivariate interdependence into account. We introduce PerseusNet, the new Perseus network module for the biological ...