BORA - UiB

Bergen Open Research Archive

Browsing Department of Informatics by Title

Bergen Open Research Archive

Browsing Department of Informatics by Title

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  • Stavrum, Ruth; Stavrum, Anne-Kristin; Valvatne, Håvard; Riley, Lee W.; Ulvestad, Elling; Jonassen, Inge; Assmus, Jørg; Doherty, Tanya Mark; Grewal, Harleen M. S. (Peer reviewed; Journal article, Public Library of Science, 2011-10-24)
    The outcome of many infections depends on the initial interactions between agent and host. Aiming at elucidating the effect of the M. tuberculosis Mce1 protein complex on host transcriptional and immunological responses ...
  • Goncearenco, Alexander; Ma, Binguang; Berezovsky, Igor (Journal article, Oxford University Press, 2014)
    DNA, RNA and proteins are major biological macromolecules that coevolve and adapt to environments as components of one highly interconnected system. We explore here sequence/structure determinants of mechanisms of adaptation ...
  • Mitternacht, Simon; Staneva, Iskra; Härd, Torleif; Irbäck, Anders (Journal article; Peer reviewed, Elsevier, 2011)
    Small soluble oligomers, and dimers in particular, of the amyloid β-peptide (Aβ) are believed to play an important pathological role in Alzheimer's disease. Here, we investigate the spontaneous dimerization of Aβ42, with ...
  • Hjertenes, Øystein M. (Master thesis, The University of Bergen, 2002)
  • Ingvaldsen, Bjørn Ove (Master thesis, The University of Bergen, 2008-10-01)
    Oppgaven omhandler en ny implementasjon av innholdshåndteringssystemet Dynamic Presetation Generator DPG, hvor hovedvekten av oppgaven tar for seg integrering av multimediafunksjonalitet i systemet.
  • Vatshelle, Martin (Master thesis, The University of Bergen, 2008)
    En innføring i naturlige nettverk. Vi forklarer og diskuterer begrepet naturlige nettverk og vurderer hvilke nettverk som bør kalles naturlige. Vi ser på forskjeller og likheter mellom tilfeldige, planlagte og naturlige ...
  • Stenvoll, Roger (Master thesis, The University of Bergen, 2009-10-01)
    This thesis discusses the possibility to apply network coding to a Bluetooth piconet. A protocol is proposed. This protocol is based on using deterministic linear network coding. The proposed alphabet size is binary, and ...
  • Frimannslund, Lennart; Steihaug, Trond (Peer reviewed; Conference object, IARIA, 2010)
    A new derivative-free optimization method for unconstrained optimization of partially separable functions is presented. Using average curvature information computed from sampled function values the method generates an ...
  • Villanger, Yngve (Doctoral thesis, The University of Bergen, 2006-04-25)
  • Vatshelle, Martin (Doctoral thesis, The University of Bergen, 2012-09-03)
    The main focus of this thesis is on using the divide and conquer technique to efficiently solve graph problems that are in general intractable. We work in the field of parameterized algorithms, using width parameters ...
  • Bodlaender, Hans L.; Fomin, Fedor V.; Koster, Arie M.C.A.; Kratsch, Dieter; Thilikos, Dimitrios M. (Peer reviewed; Journal article, Springer, 2011-01-21)
    In this note, we give a proof that several vertex ordering problems can be solved in O ∗(2 n ) time and O ∗(2 n ) space, or in O ∗(4 n ) time and polynomial space. The algorithms generalize algorithms for the Travelling ...
  • Rosbach, Alexander Hoem (Master thesis, The University of Bergen, 2013-08-01)
    Programming is a difficult skill to learn, and programming courses have high dropout rates. In this thesis we study the problems that students have during their first introductory programming course at The University ...
  • Bjørstad, Trond Rognebakke (Master thesis, The University of Bergen, 2004)
  • Ruiz, Marc; Boada, Imma; Viola, Ivan; Bruckner, Stefan; Feixas, Miquel; Sbert, Mateu (Peer reviewed; Conference object, The Eurographics Association, 2008)
    lighting effects in a faster way than global illumination. Its application in volume visualization is of special interest since it permits us to generate a high quality rendering at a low cost. In this paper, we propose ...
  • Barsnes, Harald; Côté, Richard G.; Eidhammer, Ingvar; Martens, Lennart (Journal article; Peer reviewed, BioMed Central, 2010-01-17)
    Background: With the growing amount of biomedical data available in public databases it has become increasingly important to annotate data in a consistent way in order to allow easy access to this rich source of information. ...
  • Frimannslund, Lennart; Steihaug, Trond (Journal article, IARIA, 2011)
    A new derivative-free optimization method for unconstrained optimization of partially separable functions is presented. Using average curvature information computed from sampled function values the method generates an ...
  • Danielsen, Lars Eirik (Doctoral thesis, The University of Bergen, 2008-05-28)
    We study objects that can be represented as graphs, error-correcting codes, quantum states, or Boolean functions. It is known that self-dual additive codes, which can also be interpreted as quantum states, can be ...
  • Frimannslund, Lennart (Doctoral thesis, The University of Bergen, 2006-06-16)
  • Cygan, Marek; Lokshtanov, Daniel; Pilipczuk, Marcin; Pilipczuk, Michal Pawel; Saurabh, Saket (Journal article, Springer, 2014-04)
    We study the CUTWIDTH problem, where the input is a graph G, and the objective is find a linear layout of the vertices that minimizes the maximum number of edges intersected by any vertical line inserted between two ...
  • Knudsen, Joakim Grahl (Doctoral thesis, The University of Bergen, 2010-11-24)
    The overall topic of this work is a graph operation known as edgelocal complementation (ELC) and its applications to iterative decoding of classical codes. Although these legacy codes are arguably not well-suited for ...

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