BORA - UiB

Bergen Open Research Archive

Browsing Department of Informatics by Title

Bergen Open Research Archive

Browsing Department of Informatics by Title

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  • Bredesen, Bjørn Andre (Master thesis, The University of Bergen, 2013-06-03)
    Polycomb/Trithorax Response Elements (PREs) are epigenetic elements that can maintain established transcriptional states over multiple cell divisions. Sequence motifs in known PREs have enabled genome-wide PRE prediction ...
  • Burrows, Eva (Doctoral thesis, 2011-05-23)
    Computational devices are rapidly evolving into massively parallel systems. Multicore processors are already standard; high performance processors such as the Cell/BE processor, graphics processing units (GPUs) ...
  • Polonsky, Andrew (Other, 2012-02-28)
  • Barsnes, Harald; Eidhammer, Ingvar; Cruciani, Véronique; Mikalsen, Svein-Ole (Journal article; Peer reviewed, IM Publications, 2008-09-22)
    Mass spectrometric analyses of peptides mainly rely on cleavage of proteins with proteases that have a defined specificity. The specificities of the proteases imply that there is not a random distribution of amino acids ...
  • Lerøy, Kjartan (Master thesis, The University of Bergen, 2010-05-31)
    The goal of bioinformatics is to support science and research in the field of biology through the application of information technology. Proteomics is a field within biology that deals with the study of proteins. This paper ...
  • Cabello, Adán; Danielsen, Lars Eirik; López-Tarrida, Antonio J.; Portillo, José R. (Peer reviewed; Journal article, Institute of Physics, 2012-06-27)
    We introduce a physical approach to social networks (SNs) in which each actor is characterized by a yes–no test on a physical system. This allows us to consider SNs beyond those originated by interactions based on pre-existing ...
  • Knudsen, Joakim Grahl (Master thesis, The University of Bergen, 2005-11-30)
  • Nilsen, Geir Kjetil (Master thesis, The University of Bergen, 2008-11-18)
    A fast algorithm for producing time-frequency representations (TFRs) is proposed. The resulting TFRs have optional time-frequency resolution up to optimality. The algorithm is further extended with a method known as ...
  • Hovland, Dag (Chapter; Peer reviewed, Springer, 2009)
    Regular expressions with numerical constraints are an extension of regular expressions, allowing to bound numerically the number of times that a subexpression should be matched. Expressions in this extension describe the ...
  • Nepal, Chirag (Doctoral thesis, The University of Bergen, 2013-05-03)
    For many years, RNAs were thought to be intermediate products between DNA and protein. The discovery of RNA interference (RNAi), a regulatory process that uses small non-coding RNAs to regulate gene expression at the ...
  • Malde, Ketil; Jonassen, Inge (Journal article, BioMed Central, 2008-01-18)
    Background Repeat masking is an important step in the EST analysis pipeline. For new species, genomic knowledge is scarce and good repeat libraries are typically unavailable. In these cases it is common practice to mask ...
  • Klingsheim, André N. (Doctoral thesis, The University of Bergen, 2008-09-24)
    Networked computer systems yield great value to businesses and governments, but also create risks. The eight papers in this thesis highlight vulnerabilities in computer systems that lead to security and privacy risks. A ...
  • Knudtsen, Christian Skauge (Master thesis, The University of Bergen, 2003)
  • Eichner, Christiane; Frost, Petter; Dysvik, Bjarte; Jonassen, Inge; Kristiansen, Bjørn; Nilsen, Frank (Peer reviewed; Journal article, BioMed Central, 2008-03-10)
    Background Lepeophtheirus salmonis is an ectoparasitic copepod feeding on skin, mucus and blood from salmonid hosts. Initial analysis of EST sequences from pre adult and adult stages of L. salmonis revealed a large ...
  • Tjøstheim, Thomas (Doctoral thesis, The University of Bergen, 2007-08-29)
    The main focus of this dissertation is on security analysis of electronic voting and online banking systems. Six papers form the basis of the thesis and include the following topics: a model for analysis of voting systems, ...
  • Abyaneh, Mohammad Reza Sohizadeh (Doctoral thesis, The University of Bergen, 2012-08-08)
    This thesis mainly examines the security analysis of lightweight protocols proposed for providing security and privacy for RFID systems. To achieve this goal, first we give a brief introduction of RFID systems. The ...
  • Abyaneh, Mohammad Reza Sohizadeh (Conference object, The author, 2012)
    In this paper, we analyze the security of two recently proposed distance bounding protocols called the “Hitomi” and the “NUS” protocols. Our results show that the claimed security of both protocols has been overestima ...
  • Valvik, Remi André Bognøy (Master thesis, The University of Bergen, 2012-02-24)
    The usage of mobile phones, PDAs and other mobile communication devices in the context of health is an emerging part of eHealth. In 2010 the American National Institutes of Health defined mHealth as "The delivery of ...
  • Patel, Daniel; Giertsen, Christopher; Thurmond, John; Gjelberg, John; Gröller, M. Eduard (Journal article; Peer reviewed, IEEE Computer Society, 2008)
    We present a toolbox for quickly interpreting and illustrating 2D slices of seismic volumetric reflection data. Searching for oil and gas involves creating a structural overview of seismic reflection data to identify ...
  • Wang, Shuang (Master thesis, The University of Bergen, 2008-11-10)
    Many problems of practical interest can be modeled as coloring problems. For example, when you are making a phone call using a mobile phone, it needs to transform the voice signal into an electronic wireless signal. Eachsuch ...

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