Now showing items 62-81 of 273

  • EDAM: an ontology of bioinformatics operations, types of data and identifiers, topics and formats 

    Ison, Jon; Kalaš, Matúš; Jonassen, Inge; Bolser, Dan; Uludag, Mahmut; McWilliam, Hamish; Malone, James; Lopez, Rodrigo; Pettifer, Steve; Rice, Peter (Oxford University Press, 2013)
    Motivation: Advancing the search, publication and integration of bioinformatics tools and resources demands consistent machine-understandable descriptions. A comprehensive ontology allowing such descriptions is therefore ...
    Journal article
  • Efficiently Locating Schema Incompatibilities in an eXtensible Markup Language 

    Kaufmann, Roland (The University of Bergen, 2003)
    Master thesis
  • Efforts towards accessible and reliable bioinformatics 

    Kalaš, Matúš (The University of Bergen, 2015-11-19)
    The aim of the presented work was contributing to making scientific computing more accessible, reliable, and thus more efficient for researchers, primarily computational biologists and molecular biologists. Many approaches ...
    Doctoral thesis
  • Elastic Grid Resources using Cloud Technologies 

    Carlsen, Joachim Christoffer (The University of Bergen, 2014-06-02)
    A Large Ion Collider Experiment (ALICE) is one of four experiments at the Large Hadron Collider (LHC) at CERN. The detectors in the ALICE experiment produce data at a rate of 4 GB/s after being filtered and compressed ...
    Master thesis
  • En studie av mesh-traverseringsmønstre for Sophus-biblioteket og kjøretids variasjoner på SGI Origin 

    Hundvebakke, Hogne (The University of Bergen, 2002)
    Master thesis
  • En visuell tilnærming til simulering av købaserte modeller i Java 

    Ervik, Morten Johannes (The University of Bergen, 2004)
    Master thesis
  • Energy-scale Aware Feature Extraction for Flow Visualization 

    Pobitzer, Armin; Tutkun, Murat; Anreassen, Øyvind; Fuchs, Raphael; Peikert, Ronald; Hauser, Helwig (Blackwell Publishing Ltd., 2011)
    In the visualization of flow simulation data, feature detectors often tend to result in overly rich response, making some sort of filtering or simplification necessary to convey meaningful images. In this paper we present ...
    Peer reviewedJournal article
  • Enhancing Content Management in DPG 

    Pino Arevalo, Ana Gabriela (The University of Bergen, 2013-11-20)
    This thesis analyzes the usability aspects of PCE and implements a new Single Page Application that attempts to solve this issues
    Master thesis
  • Error Detection and Correction for Symmetric and Asymmetric Channels 

    Naydenova, Irina Petkova (The University of Bergen, 2007-08-27)
    When a message is sent over a channel errors can occur due to noise during the transmission. So it is very important to know the error correction and detection capability of the code, which is used to encode the ...
    Doctoral thesis
  • Exact algorithms for MAX-2SAT and MAX-3SAT via multidimensional matrix multiplication 

    Petkevich, Yevgheni (The University of Bergen, 2015-06-01)
    In this thesis it is showed how an $O(n^{4-\epsilon})$ algorithm for the cube multiplication problem (that is defined in the thesis) would imply a faster than naive $O^{*}(2^{n(1-\frac{\epsilon}{4})})$ algorithm for the ...
    Master thesis
  • Exact algorithms for treewidth and minimum fill-in 

    Fomin, Fedor V.; Todinca, Ioan; Kratsch, Dieter; Villanger, Yngve (SIAM Journals, 2006)
    Journal article
  • Exploring Subexponential Parameterized Complexity of Completion Problems 

    Drange, Pål Grønås; Fomin, Fedor V.; Pilipczuk, Michal Pawel; Villanger, Yngve (Schloss Dagstuhl - Leibniz-Zentrum fuer Informatik, 2014-02-19)
    Let F be a family of graphs. In the F-Completion problem, we are given an n-vertex graph G and an integer k as input, and asked whether at most k edges can be added to G so that the resulting graph does not contain a ...
    Journal article
  • Exploring the evolution of protein function in Archaea 

    Goncearenco, Alexander; Berezovsky, Igor N. (BioMed Central, 2012-05-30)
    Background: Despite recent progress in studies of the evolution of protein function, the questions what were the first functional protein domains and what were their basic building blocks remain unresolved. Previously, we ...
    Journal article
  • Exponential time algorithms: Structures, measures, and bounds 

    Gaspers, Serge (The University of Bergen, 2008-12-05)
    This thesis studies exponential time algorithms, more precisely, algorithms exactly solving problems for which no polynomial time algorithm is known and likely to exist. Interested in worst–case upper bounds on the running ...
    Doctoral thesis
  • Expressive Visualization and Rapid Interpretation of Seismic Volumes 

    Patel, Daniel (The University of Bergen, 2009-10-27)
    One of the most important resources in the world today is energy. Oil and gas provide two thirds of the world energy consumption, making the world completely dependent on it. Locating and recovering the remaining oil and ...
    Doctoral thesis
  • Fast Method for Maximum-Flow Problem with Minimum-Lot Sizes 

    Ganeshan, Vithya (The University of Bergen, 2015-03-03)
    In transportation networks, such as pipeline networks for transporting natural gas, it is often impractical to send across amounts of flow below a certain threshold. Such lower threshold is referred as the minimum-lot size. ...
    Master thesis
  • Fast methods to solve the pooling problem 

    Kejriwal, Anisha (The University of Bergen, 2014-05-31)
    In pipeline transportation of natural gas, simple network flow problems are replaced by hard ones when bounds on the flow quality are imposed. The sources, typically represented by gas wells, provide flow of unequal ...
    Master thesis
  • Feasible Algorithms for Semantics — Employing Automata and Inference Systems 

    Hovland, Dag (The University of Bergen, 2010-12-16)
    Doctoral thesis
  • Filtering duplicate reads from 454 pyrosequencing data 

    Balzer, Susanne Mignon; Malde, Ketil; Grohme, Markus A.; Jonassen, Inge (Oxford University Press, 2013)
    Motivation: Throughout the recent years, 454 pyrosequencing has emerged as an efficient alternative to traditional Sanger sequencing and is widely used in both de novo whole-genome sequencing and metagenomics. Especially ...
    Peer reviewedJournal article
  • Filtering of FTLE for Visualizing Spatial Separation in Unsteady 3D Flow 

    Pobitzer, Armin; Peikert, Ronald; Fuchs, Raphael; Theisel, Holger; Hauser, Helwig (Springer, 2012)
    In many cases, feature detection for flow visualization is structured in two phases: first candidate identification, and then filtering. With this paper, we propose to use the directional information contained in the ...
    Peer reviewedJournal article