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  • Predicting Gene Regulatory Elements in Silico on a Genomic Scale 

    Brazma, Alvis; Jonassen, Inge; Vilo, Jaak; Ukkonen, Esko (Cold Spring Harbor Laboratory Press, 1998-05-18)
    We performed a systematic analysis of gene upstream regions in the yeast genome for occurrences of regular expression-type patterns with the goal of identifying potential regulatory elements. To achieve this goal, we have ...
    Journal article
  • A simple spreadsheet-based, MIAME-supportive format for microarray data: MAGE-TAB 

    Rayner, Tim F.; Rocca-Serra, Philippe; Spellman, Paul T.; Causton, Helen C.; Farne, Anna; Holloway, Ele; Irizarry, Rafael A.; Liu, Junmin; Maier, Donald S.; Miller, Michael; Petersen, Kjell; Quackenbush, John; Sherlock, Gavin; Stoeckert, Christian J. Jr; White, Joseph; Whetzel, Patricia L.; Wymore, Farrell; Parkinson, Helen; Sarkans, Ugis; Ball, Catherine A.; Brazma, Alvis (BioMed Central, 2006-11-06)
    Background: Sharing of microarray data within the research community has been greatly facilitated by the development of the disclosure and communication standards MIAME and MAGEML by the MGED Society. However, the ...
    Journal article