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dc.contributor.authorMitternacht, Simoneng
dc.contributor.authorBerezovsky, Igor N.eng
dc.date.accessioned2012-11-12T10:07:04Z
dc.date.available2012-11-12T10:07:04Z
dc.date.issued2011eng
dc.identifier.citationProtein Engineering, Design and Selection 24(4): 405-409eng
dc.identifier.issn1741-0126eng
dc.identifier.urihttp://hdl.handle.net/1956/6173
dc.description.abstractAn important aspect of understanding protein allostery, and of artificial effector design, is the characterization and prediction of substrate- and effector-binding sites. To find binding sites in allosteric enzymes, many of which are oligomeric with allosteric sites at domain interfaces, we devise a local centrality measure for residue interaction graphs, which behaves well for both small/monomeric and large/multimeric proteins. The measure is purely structure based and has a clear geometrical interpretation and no free parameters. It is not biased towards typically catalytic residues, a property that is crucial when looking for non-catalytic effector sites, which are potent drug targets.eng
dc.description.sponsorshipNorwegian Research Council/FUGE IIeng
dc.language.isoengeng
dc.publisherOxford University Presseng
dc.subjectAllosteryeng
dc.subjectallosteric regulationeng
dc.subjectcatalytic siteseng
dc.subjectbinding siteseng
dc.subjectsite predictioneng
dc.subjectlocal closenesseng
dc.subjectProtein structureeng
dc.subjectEnzymeeng
dc.subject.ddc572.330285 (DDC23 WebDewey)eng
dc.subject.ddc572.633 (DDC23 WebDewey)eng
dc.subject.ddc572.744 (DDC23 WebDewey)eng
dc.subject.ddc003.72 (DDC23 WebDewey)eng
dc.titleA geometry-based generic predictor for catalytic and allosteric siteseng
dc.typeJournal articleeng
dc.typePeer reviewedeng
dc.rights.holderCopyright the Author 2010. Published by Oxford University Press. All rights reserved.
dc.type.versionacceptedVersioneng
bora.peerreviewedPeer reviewedeng
bibo.eissn1741-0134eng
bibo.doihttp://dx.doi.org/10.1093/protein/gzq115eng
dc.identifier.doihttp://dx.doi.org/10.1093/protein/gzq115


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