Blar i Faculty of Mathematics and Natural Sciences på emneord "Protein dynamics"
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Binding Leverage as a Molecular Basis for Allosteric Regulation
(Peer reviewed; Journal article, 2011-09-15)Allosteric regulation involves conformational transitions or fluctuations between a few closely related states, caused by the binding of effector molecules. We introduce a quantity called binding leverage that measures the ... -
Coherent Conformational Degrees of Freedom as a Structural Basis for Allosteric Communication
(Peer reviewed; Journal article, 2011-12-08)Conformational changes in allosteric regulation can to a large extent be described as motion along one or a few coherent degrees of freedom. The states involved are inherent to the protein, in the sense that they are visited ... -
Comparing the intrinsic dynamics of multiple protein structures using elastic network models
(Peer reviewed; Journal article, 2015-05)Background: Elastic network models (ENMs) are based on the simple idea that a protein can be described as a set of particles connected by springs, which can then be used to describe its intrinsic flexibility using, for ...