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    • Proteomic signature of tubulointerstitial tissue predicts prognosis in IgAN 

      Paunas, Flavia Teodora Ioana; Finne, Kenneth; Leh, Sabine; Marti, Hans Peter; Berven, Frode Steingrimsen; Vikse, Bjørn Egil (Journal article; Peer reviewed, 2022-03-24)
      Background: IgA nephropathy (IgAN) is associated with a significant risk of progression to kidney failure. Tubular atrophy is an established important risk factor for progressive disease, but few studies have investigated ...

    • Proteomic Studies of Primary Acute Myeloid Leukemia Cells Derived from Patients Before and during Disease-Stabilizing Treatment Based on All-Trans Retinoic Acid and Valproic Acid 

      Hernandez-Valladares, Maria; Wangen, Rebecca; Aasebø, Elise; Reikvam, Håkon; Berven, Frode Steingrimsen; Selheim, Frode; Bruserud, Øystein (Journal article; Peer reviewed, 2021)
      All-trans retinoic acid (ATRA) and valproic acid (VP) have been tried in the treatment of non-promyelocytic variants of acute myeloid leukemia (AML). Non-randomized studies suggest that the two drugs can stabilize AML and ...

    • Proteomic Tools for Food and Feed Authentication 

      Varunjikar, Madhushri Shrikant (Doctoral thesis, 2023-03-10)
      På grunn av globalt økende etterspørsel etter mat og fôr, introduseres nye proteinholdige ingredienser i matsystemene våre i økende skala. Innføring av nye ingredienser og introduksjon av sirkulære matsystemer gir nye ...

    • Proteomics and lipidomics analyses reveal modulation of lipid metabolism by perfluoroalkyl substances in liver of Atlantic cod (Gadus morhua) 

      Dale, Karina; Yadetie, Fekadu; Müller, Mette Helen Bjørge; Pampanin, Daniela Maria; Gilabert, Alejandra; Zhang, Xiaokang; Tairova, Zhanna; Haarr, Ane; Lille-Langøy, Roger; Lyche, Jan Ludvig; Porte, Cinta; Karlsen, Odd Andre; Goksøyr, Anders (Journal article; Peer reviewed, 2020)
      The aim of the present study was to investigate effects of defined mixtures of polycyclic aromatic hydrocarbons (PAHs) and perfluoroalkyl substances (PFASs), at low, environmentally relevant (1× = L), or high (20× = H) ...

    • The PRoteomics IDEntification (PRIDE) Converter 2 Framework: An Improved Suite of Tools to Facilitate Data Submission to the PRIDE Database and the ProteomeXchange Consortium 

      Côté, Richard G.; Griss, Johannes; Dianes, José A.; Wang, Rui; Wright, James C.; van den Toorn, Henk W.P.; van Breukelen, Bas; Heck, Albert J. R.; Hulstaert, Niels; Martens, Lennart; Reisinger, Florian; Csordas, Attila; Ovelleiro, David; Perez-Rivevol, Yasset; Barsnes, Harald; Hermjakob, Henning; Vizcaíno, Juan Antonio (Peer reviewed; Journal article, 2012-12)
      The original PRIDE Converter tool greatly simplified the process of submitting mass spectrometry (MS)-based proteomics data to the PRIDE database. However, after much user feedback, it was noted that the tool had some ...

    • The Proteomics Identifications database: 2010 update 

      Vizcaíno, Juan Antonio; Côté, Richard G.; Reisinger, Florian; Barsnes, Harald; Foster, JM; Rameseder, Jonathan; Hermjakob, Henning; Martens, Lennart (Peer reviewed; Journal article, 2009-11-11)
      The Proteomics Identifications database (PRIDE, http://www.ebi.ac.uk/pride) at the European Bioinformatics Institute has become one of the main repositories of mass spectrometry-derived proteomics data. For the last 2 ...

    • A proteomics sample metadata representation for multiomics integration and big data analysis 

      Dai, Chengxin; Füllgrabe, Anja; Pfeuffer, Julianus; Solovyeva, Elizaveta M.; Deng, Jingwen; Moreno, Pablo; Kamatchinathan, Selvakumar; Kundu, Deepti Jaiswal; George, Nancy; Fexova, Silvie; Grüning, Björn A.; Föll, Melanie Christine; Griss, Johannes; Vaudel, Marc; Audain, Enrique; Locard-Paulet, Marie; Turewicz, Michael; Eisenacher, Martin; Uszkoreit, Julian; Van Den Bossche, Tim; Schwämmle, Veit; Webel, Henry; Schulze, Stefan; Bouyssié, David; Jayaram, Savita; Duggineni, Vinay Kumar; Samaras, Patroklos; Wilhelm, Mathias; Choi, Meena; Wang, Mingxun; Kohlbacher, Oliver; Brazma, Alvis; Papatheodorou, Irene; Bandeira, Nuno; Deutsch, Eric W.; Vizcaíno, Juan Antonio; Bai, Mingze; Sachsenberg, Timo; Levitsky, Lev I.; Perez-Riverol, Yasset (Journal article; Peer reviewed, 2021)
      The amount of public proteomics data is rapidly increasing but there is no standardized format to describe the sample metadata and their relationship with the dataset files in a way that fully supports their understanding ...

    • Proteomics Standards Initiative Extended FASTA Format 

      Binz, Pierre-Alain; Shofstahl, Jim; Vizcaino, Juan Antonio; Barsnes, Harald; Chalkley, Robert J.; Menschaert, Gerben; Alpi, Emanuele; Clauser, Karl; Eng, Jimmy K.; Lane, Lydie; Seymour, Sean L.; Hernández Sánchez, Luis Francisco; Mayer, Gerhard; Eisenacher, Martin; Perez-Riverol, Yasset; Kapp, Eugene A.; Mendoza, Luis; Baker, Peter R.; Collins, Andrew; Van Den Bossche, Tim; Deutsch, Eric W. (Peer reviewed; Journal article, 2019)
      Mass-spectrometry-based proteomics enables the high-throughput identification and quantification of proteins, including sequence variants and post-translational modifications (PTMs) in biological samples. However, most ...

    • Protocol for a multicentre, parallelgroup, open-label randomised controlled trial comparing ferric carboxymaltose with the standard of care in anaemic Malawian pregnant women: the REVAMP trial 

      Mwangi, Martin N; Mzembe, Glory; Moya, Ernest; Braat, Sabine; Harding, Rebecca; Robberstad, Bjarne; Simpson, Julie; Stones, William; Rogerson, Stephen; Biselele, Kabeya; Chinkhumba, Jobiba Joe Henderson; Larson, Leila; Ataide, Ricardo; Phiri, Kamija S.; Pasricha, Sant-Rayn (Journal article; Peer reviewed, 2021)
      Introduction Anaemia in pregnancy remains a critical global health problem, affecting 46% of pregnant women in Africa and 49% in Asia. Oral iron therapy requires extended adherence to achieve correction of anaemia and ...

    • Protocol for a systematic review and meta-analysis of research on the associations between workplace bullying and sleep 

      Nielsen, Morten Birkeland; Pallesen, Ståle; Harris, Anette; Einarsen, Ståle (Peer reviewed; Journal article, 2018-12-13)
      Background: Existing evidence on the association between exposure to bullying and sleep is limited and inconclusive. The aims of this planned systematic review and meta-analysis are therefore (1) to determine whether ...

    • Protocol for a systematic review and meta-analysis on the associations between shift work and sickness absence 

      Sunde, Erlend; Harris, Anette Kristoffersen; Nielsen, Morten Birkeland; Bjorvatn, Bjørn; Lie, Stein Atle; Holmelid, Øystein; Vedaa, Øystein; Waage, Siri; Pallesen, Ståle (Journal article; Peer reviewed, 2022)
      Background Shift work, i.e., non-standard work hours, has been associated with both short- and long-term sickness absence. However, findings are inconsistent and inconclusive. Thus far, no comprehensive meta-analytic ...

    • Protocol for data extraction: how realworld data have been used in the National Institute for Health and Care Excellence appraisals of cancer therapy 

      Kang, Jiyeon; Cairns, John Alexander (Journal article; Peer reviewed, 2022)
      Introduction Due to the limitations of relying on randomised controlled trials, the potential benefits of real-world data (RWD) in enriching evidence for health technology assessment (HTA) are highlighted. Despite increased ...

    • Protocol for derivation of organoids and patient-derived orthotopic xenografts from glioma patient tumors 

      Oudin, Anaïs; Baus, Virginie; Barthelemy, Vanessa; Fabian, Carina; Klein, Eliane; Dieterle, Monika; Wantz, May; Hau, Ann-Christin; Dording, Claire; Bernard, Amandine; Michelucci, Alessandro; Yabo, Yahaya A.; Kanli, Georgia; Keunen, Olivier; Bjerkvig, Rolf; Niclou, Simone Pierrette; Golebiewska, Anna (Journal article; Peer reviewed, 2021)
      Tumor organoids and patient-derived orthotopic xenografts (PDOXs) are some of the most valuable pre-clinical tools in cancer research. In this protocol, we describe efficient derivation of organoids and PDOX models from ...

    • Protocol for the Cognitive Interventions and Nutritional Supplements (CINS) trial: A randomized controlled multicenter trial of a brief intervention (BI) versus a BI plus cognitive behavioral treatment (CBT) versus nutritional supplements for patients with long-lasting muscle and back pain 

      Reme, Silje Endresen; Tveito, Torill Helene; Chalder, Trudie; Bjørkkjær, Tormod; Indahl, Aage; Brox, Jens Ivar; Fors, Egil; Hagen, Eli Molde; Eriksen, Hege Randi (Peer reviewed; Journal article, 2011-07-07)
      Background: Brief intervention programs are clinically beneficial, and cost efficient treatments for low back pain, when offered at 8-12 weeks, compared with treatment as usual. However, about 30% of the patients do not ...

    • Protocol for the effect evaluation of Individual Placement and Support (IPS): a randomized controlled multicenter trial of IPS versus treatment as usual for patients with moderate to severe mental illness in Norway 

      Sveinsdottir, Vigdis; Løvvik, Camilla; Fyhn, Tonje; Monstad, Karin; Ludvigsen, Kari; Øverland, Simon; Reme, Silje Endresen (Peer reviewed; Journal article, 2014-11-18)
      Background: Roughly one third of disability pensions in Norway are issued for mental and behavioral disorders, and vocational rehabilitation offered to this group has traditionally been dominated by train-and-place approaches ...

    • Protocol for the SEED-trial: Supported Employment and preventing Early Disability 

      Sveinsdottir, Vigdis; Tveito, Torill Helene; Bond, Gary R.; Grasdal, Astrid Louise; Lie, Stein Atle; Reme, Silje Endresen (Peer reviewed; Journal article, 2016-07-15)
      Background: Early withdrawal or exclusion from the labor market leads to significant personal and societal costs. In Norway, the increasing numbers of young adults receiving disability pension is a growing problem. While ...

    • A Protocorinthian aryballos with a myth scene from Tegea 

      Østby, Erik (Journal article; Peer reviewed, 2020)
      During the preparation of the new exhibition in the Museum of Tegea it was discovered that one composed fragment from a Protocorinthian aryballos with a complicated, figured representation, found during the excavations of ...

    • Protoindustrial iron production in Østerdalen and challenges in managing this heritage 

      Risbøl, Ole (Universitetet i Bergen, Arkeologiske Skrifter (UBAS) International, Chapter; Peer reviewed, 2005)

    • Proton acceleration in thermonuclear nova explosions revealed by gamma rays 

      Acciari, V.A.; Ansoldi, S.; Antonelli, L.A.; Arbet Engels, Engels; Artero, M.; Asano, K.; Baack, D.; Babić, A.; Baquero, A.; Barres de Almeida, de; Barrio, J.A.; Batković, I.; Becerra González, Gonzalez; Bednarek, W.; Bellizzi, L.; Bernardini, E.; Bernardos, M.; Berti, A.; Besenrieder, J.; Bhattacharyya, W.; Bigongiari, C.; Biland, A.; Blanch, O.; Bökenkamp, H.; Bonnoli, G.; Bošnjak, Z.; Busetto, G.; Carosi, R.; Ceribella, G.; Cerruti, M.; Chai, Y.; Chilingarian, A.; Cikota, S.; Colak, S.M.; Colombo, E.; Contreras, J.L.; Cortina, J.; Covino, S.; D'Amico, Giacomo; D’Elia, V.; Da Vela, Vela; Dazzi, F.; De Angelis, Angelis; De Lotto, Lotto; Del Popolo, Popolo; Delfino, M.; Delgado, J.; Delgado Mendez, Mendez; Depaoli, D.; Di Pierro, Pierro; Di Venere, Venere; Do Souto Espiñeira, Souto; Prester, D. Dominis; Donini, A.; Dorner, D.; Doro, M.; Elsaesser, D.; Fallah Ramazani, Ramazani; Fariña Alonso, Alonso; Fattorini, A.; Fonseca, M.V.; Font, L.; Fruck, C.; Fukami, S.; Fukazawa, Y.; García López, Lopez; Garczarczyk, M.; Gasparyan, S.; Gaug, M.; Giglietto, N.; Giordano, F.; Gliwny, P.; Godinović, N.; Green, J.G.; Green, D.; Hadasch, D.; Hahn, A.; Hassan, T.; Heckmann, L.; Herrera, J.; Hoang, J.; Hrupec, D.; Hütten, M.; Inada, T.; Ishio, K.; Iwamura, Y.; Jiménez Martínez, Martinez; Jormanainen, J.; Jouvin, L.; Kerszberg, D.; Kobayashi, Y.; Kubo, H.; Kushida, J.; Lamastra, A.; Lelas, D.; Leone, F.; Lindfors, E.; Linhoff, L.; Lombardi, S.; Longo, F.; López-Coto, R.; López-Moya, M.; López-Oramas, A.; Loporchio, S.; Machado de Oliveira Fraga, de; Maggio, C.; Majumdar, P.; Makariev, M.; Mallamaci, M.; Maneva, G.; Manganaro, M.; Mannheim, K.; Maraschi, L.; Mariotti, M.; Martínez, M.; Mas Aguilar, Aguilar; Mazin, D.; Menchiari, S.; Mender, S.; Mićanović, S.; Miceli, D.; Miener, T.; Miranda, J.M.; Mirzoyan, R.; Molina, E.; Moralejo, A.; Morcuende, D.; Moreno, V.; Moretti, E.; Nakamori, T.; Nava, L.; Neustroev, V.; Nievas Rosillo, Rosillo; Nigro, C.; Nilsson, K.; Nishijima, K.; Noda, K.; Nozaki, S.; Ohtani, Y.; Oka, T.; Otero-Santos, J.; Paiano, S.; Palatiello, M.; Paneque, D.; Paoletti, R.; Paredes, J.M.; Pavletić, L.; Peñil, P.; Persic, M.; Pihet, M.; Prada Moroni, Moroni; Prandini, E.; Priyadarshi, C.; Puljak, I.; Rhode, W.; Ribó, M.; Rico, J.; Righi, C.; Rugliancich, A.; Sahakyan, N.; Saito, T.; Sakurai, S.; Satalecka, K.; Saturni, F.G.; Schleicher, B.; Schmidt, K.; Schweizer, T.; Sitarek, J.; Šnidarić, I.; Sobczynska, D.; Spolon, A.; Stamerra, A.; Strišković, J.; Strom, D.; Strzys, M.; Suda, Y.; Surić, T.; Takahashi, M.; Takeishi, R.; Tavecchio, F.; Temnikov, P.; Terzić, T.; Teshima, M.; Tosti, L.; Truzzi, S.; Tutone, A.; Ubach, S.; van Scherpenberg, Scherpenberg; Vanzo, G.; Vazquez Acosta, Acosta; Ventura, S.; Verguilov, V.; Vigorito, C.F.; Vitale, V.; Vovk, I.; Will, M.; Wunderlich, C.; Yamamoto, T.; Zarić, D.; Ambrosino, F.; Cecconi, M.; Catanzaro, G.; Ferrara, C.; Frasca, A.; Munari, M.; Giustolisi, L.; Alonso-Santiago, J.; Giarrusso, M.; Munari, U.; Valisa, P. (Journal article; Peer reviewed, 2022)
      Classical novae are cataclysmic binary star systems in which the matter of a companion star is accreted on a white dwarf1,2. Accumulation of hydrogen in a layer eventually causes a thermonuclear explosion on the surface ...

    • Proton Beam Test Of A High Granularity Calorimeter For Proton Computed Tomography 

      Austreim, Kristian (Master thesis, 2015-06-01)
      Radiation therapy is a non-invasive method of treating cancer. The purpose of it is to stop cancer cells from reproducing properly which will in turn cause the cancer cells to die out. This is achieved by having ionising ...