Browsing Department of Informatics by Author "Xue, Yaxin"
Now showing items 1-4 of 4
-
Development and application of computational methods for NGS-based microbiome research
Xue, Yaxin (Doctoral thesis, 2020-11-05)The advance of DNA sequencing technologies has dramatically expanded our knowledge of microbial community composition and their functions from diverse environments. The most common Next Generation Sequencing (NGS)-based ... -
Metagenome-assembled genome distribution and key functionality highlight importance of aerobic metabolism in Svalbard permafrost
Xue, Yaxin; Jonassen, Inge; Øvreås, Lise; Tas, Neslihan (Journal article; Peer reviewed, 2020)Permafrost underlies a large portion of the land in the Northern Hemisphere. It is proposed to be an extreme habitat and home for cold-adaptive microbial communities. Upon thaw permafrost is predicted to exacerbate increasing ... -
Metagenomic tools in microbial ecology research
Taş, Neslihan; de Jong, Anniek EE; Li, Yaoming; Trubl, Gareth; Xue, Yaxin; Dove, Nicholas C (Journal article; Peer reviewed, 2021)Ability to directly sequence DNA from the environment permanently changed microbial ecology. Here, we review the new insights to microbial life gleaned from the applications of metagenomics, as well as the extensive set ... -
Reconstructing ribosomal genes from large scale total RNA meta-transcriptomic data
Xue, Yaxin; Lanzén, Anders; Jonassen, Inge (Journal article; Peer reviewed, 2020-03-13)Motivation Technological advances in meta-transcriptomics have enabled a deeper understanding of the structure and function of microbial communities. ‘Total RNA’ meta-transcriptomics, sequencing of total reverse transcribed ...