Browsing Department of Informatics by Subject "VDP::Matematikk og naturvitenskap: 400::Basale biofag: 470::Bioinformatikk: 475"
Now showing items 1-7 of 7
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Axis patterning by BMPs: cnidarian network reveals evolutionary constraints
(Peer reviewed; Journal article, 2015-03)BMP signaling plays a crucial role in the establishment of the dorso-ventral body axis in bilaterally symmetric animals. However, the topologies of the bone morphogenetic protein (BMP) signaling networks vary drastically ... -
Chromatin and epigenetic features of long-range gene regulation
(Peer reviewed; Journal article, 2013-06-13)The precise regulation of gene transcription during metazoan development is controlled by a complex system of interactions between transcription factors, histone modifications and modifying enzymes and chromatin conformation. ... -
The EMBRACE web service collection
(Peer reviewed; Journal article, 2010-05-10)The EMBRACE (European Model for Bioinformatics Research and Community Education) web service collection is the culmination of a 5-year project that set out to investigate issues involved in developing and deploying web ... -
FreeContact: Fast and free software for protein contact prediction from residue co-evolution
(Peer reviewed; Journal article, 2014-03-26)Background: 20 years of improved technology and growing sequences now renders residue-residue contact constraints in large protein families through correlated mutations accurate enough to drive de novo predictions of protein ... -
JASPAR 2014: An extensively expanded and updated open-access database of transcription factor binding profiles
(Peer reviewed; Journal article, 2014-01)JASPAR (http://jaspar.genereg.net) is the largest open-access database of matrix-based nucleotide profiles describing the binding preference of transcription factors from multiple species. The fifth major release greatly ... -
Molecular mechanisms of adaptation emerging from the physics and evolution of nucleic acids and proteins
(Peer reviewed; Journal article, 2014)DNA, RNA and proteins are major biological macromolecules that coevolve and adapt to environments as components of one highly interconnected system. We explore here sequence/structure determinants of mechanisms of adaptation ... -
The Proteomics Identifications database: 2010 update
(Peer reviewed; Journal article, 2009-11-11)The Proteomics Identifications database (PRIDE, http://www.ebi.ac.uk/pride) at the European Bioinformatics Institute has become one of the main repositories of mass spectrometry-derived proteomics data. For the last 2 ...