dc.contributor.author | Mathelier, Anthony | eng |
dc.contributor.author | Zhao, Xiaobei | eng |
dc.contributor.author | Zhang, Allen W. | eng |
dc.contributor.author | Parcy, François | eng |
dc.contributor.author | Worsley-Hunt, Rebecca | eng |
dc.contributor.author | Arenillas, David J. | eng |
dc.contributor.author | Buchman, Sorana | eng |
dc.contributor.author | Chen, Chih-yu | eng |
dc.contributor.author | Chou, Alice | eng |
dc.contributor.author | Ienasescu, Hans | eng |
dc.contributor.author | Lim, Jonathan | eng |
dc.contributor.author | Shyr, Casper | eng |
dc.contributor.author | Tan, Ge | eng |
dc.contributor.author | Zhou, Michelle | eng |
dc.contributor.author | Lenhard, Boris | eng |
dc.contributor.author | Sandelin, Albin | eng |
dc.contributor.author | Wasserman, Wyeth W. | eng |
dc.date.accessioned | 2015-09-11T12:10:08Z | |
dc.date.available | 2015-09-11T12:10:08Z | |
dc.date.issued | 2014-01 | |
dc.identifier.issn | 0305-1048 | en_US |
dc.identifier.issn | 1362-4962 | en_US |
dc.identifier.uri | https://hdl.handle.net/1956/10452 | |
dc.description.abstract | JASPAR (http://jaspar.genereg.net) is the largest open-access database of matrix-based nucleotide profiles describing the binding preference of transcription factors from multiple species. The fifth major release greatly expands the heart of JASPAR—the JASPAR CORE subcollection, which contains curated, non-redundant profiles—with 135 new curated profiles (74 in vertebrates, 8 in Drosophila melanogaster, 10 in Caenorhabditis elegans and 43 in Arabidopsis thaliana; a 30% increase in total) and 43 older updated profiles (36 in vertebrates, 3 in D. melanogaster and 4 in A. thaliana; a 9% update in total). The new and updated profiles are mainly derived from published chromatin immunoprecipitation-seq experimental datasets. In addition, the web interface has been enhanced with advanced capabilities in browsing, searching and subsetting. Finally, the new JASPAR release is accompanied by a new BioPython package, a new R tool package and a new R/Bioconductor data package to facilitate access for both manual and automated methods. | en_US |
dc.language.iso | eng | eng |
dc.publisher | Oxford University Press | en_US |
dc.rights | Attribution CC BY-NC | eng |
dc.rights.uri | http://creativecommons.org/licenses/by-nc/3.0/ | eng |
dc.title | JASPAR 2014: An extensively expanded and updated open-access database of transcription factor binding profiles | en_US |
dc.type | Peer reviewed | |
dc.type | Journal article | |
dc.date.updated | 2015-07-28T12:14:52Z | |
dc.description.version | publishedVersion | en_US |
dc.rights.holder | Copyright 2014 The Authors | en_US |
dc.identifier.doi | https://doi.org/10.1093/nar/gkt997 | |
dc.identifier.cristin | 1162953 | |
dc.source.journal | Nucleic Acids Research | |
dc.source.40 | 42 | |
dc.source.14 | 1 | |
dc.source.pagenumber | D142-D147 | |
dc.subject.nsi | VDP::Matematikk og naturvitenskap: 400::Basale biofag: 470::Bioinformatikk: 475 | |
dc.subject.nsi | VDP::Mathematics and natural scienses: 400::Basic biosciences: 470::Bioinformatics: 475 | |