Development of Tools for Analyzing and Sharing Proteomics Data

Paper I: BMC Bioinformatics 7(42), Barsnes, H.; Mikalsen, S.; Eidhammer, I., MassSorter: a tool for administrating and analyzing data from mass spectrometry experiments on proteins with known amino acid sequences. Copyright 2006 Barsnes et al; licensee BioMed Central. Reproduced with permission. Published version. The published version is also available at: http://dx.doi.org/10.1186/1471-2105-7-42

Paper II: European Journal of Mass Spectrometry 14(5), Barsnes, H.; Eidhammer, I.; Cruciani, V.; Mikalsen, S.-O., Protease-dependent fractional mass and peptide properties, pp. 311-317. Copyright 2008 IM Publications. Reproduced with permission. Published version. The published version is also available at: http://dx.doi.org/10.1255/ejms.934

Paper III: BMC Research Notes 1(130), Barsnes, H.; Mikalsen, S.-O.; Eidhammer, I., Blind search for post-translational modifications and amino acid substitutions using peptide mass fingerprints from two proteases. Copyright 2008 Barsnes et al; licensee BioMed Central. Reproduced with permission. Published version. The published version is also available at: http://dx.doi.org/10.1186/1756-0500-1-130

Paper IV: Proteomics 10(5), Barsnes, H., Eidhammer, I.; Martens, L., FragmentationAnalyzer: An open-source tool to analyze MS/MS fragmentation data, pp. 1087-1090. Copyright 2010 WILEY-VCH Verlag. Full text not available in BORA due to publisher restrictions. The published version is available at: : http://dx.doi.org/10.1002/pmic.200900681

Paper V: Barsnes, H., Eidhammer, I.; Martens, L., 2010, Analyzing MS/MS Fragmentation Data. Full text not available in BORA.

Paper VI: Nature Biotechnology 27(7), Barsnes, H.; Vizcaíno, J. A.; Eidhammer, I.; Martens, L., PRIDE Converter: making proteomics data-sharing easy, pp. 598-599. Copyright 2009 Nature America. Full text not available in BORA due to publisher restrictions. The published version is available at: http://dx.doi.org/10.1038/nbt0709-598

Paper VII: BMC Bioinformatics 11(34), Barsnes, H.; Côté, R. G.; Eidhammer, I.; Martens, L., OLS Dialog: An open-source front end to the Ontology Lookup Service. Copyright 2010 Barsnes et al; licensee BioMed Central. Reproduced with permission. Published version. The published version is also available at: http://dx.doi.org/10.1186/1471-2105-11-34

Publisher

The University of Bergen