Blar i Department of Biological and Medical Psychology på forfatter "Nagaraj, Nagarjuna"
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Accurate and Automated High-Coverage Identification of Chemically Cross-Linked Peptides with MaxLynx
Yllmaz, Şule; Busch, Florian; Nagaraj, Nagarjuna; Cox, Heinz Jürgen (Journal article; Peer reviewed, 2022)Cross-linking combined with mass spectrometry (XL-MS) provides a wealth of information about the three-dimensional (3D) structure of proteins and their interactions. We introduce MaxLynx, a novel computational proteomics ... -
MaxDIA enables library-based and library-free data-independent acquisition proteomics
Sinitcyn, Pavel; Hamzeiy, Hamid; Salinas Soto, Favio; Itzhak, Daniel; McCarthy, Frank; Wichmann, Christoph; Steger, Martin; Ohmayer, Uli; Distler, Ute; Kaspar-Schoenefeld, Stephanie; Prianichnikov, Nikita; Yılmaz, Şule; Rudolph, Jan Daniel; Tenzer, Stefan; Perez-Riverol, Yasset; Nagaraj, Nagarjuna; Humphrey, Sean J.; Cox, Juergen (Journal article; Peer reviewed, 2021)MaxDIA is a software platform for analyzing data-independent acquisition (DIA) proteomics data within the MaxQuant software environment. Using spectral libraries, MaxDIA achieves deep proteome coverage with substantially ...