Blar i Department of Informatics på forfatter "Kalaš, Matúš"
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Perspectives on automated composition of workflows in the life sciences [version 1; peer review: 2 approved]
Lamprecht, Anna-Lena; Palmblad, Magnus; Ison, Jon; Schwämmle, Veit; Al Manir, Mohammad Sadnan; Altintas, Ilkay; Baker, Christopher J. O.; Ben Hadj Amor, Ammar; Capella-Gutierrez, Salvador; Charonyktakis, Paulos; Crusoe, Michael R.; Gil, Yolanda; Goble, Carole; Griffin, Timothy J.; Groth, Paul; Ienasescu, Hans; Jagtap, Pratik; Kalaš, Matúš; Kasalica, Vedran; Khanteymoori, Alireza; Kuhn, Tobias; Mei, Hailiang; Ménager, Hervé; Möller, Steffen; Richardson, Robin A.; Robert, Vincent; Soiland-Reyes, Stian; Stevens, Robert; Szaniszlo, Szoke; Verberne, Suzan; Verhoeven, Aswin; Wolstencroft, Katherine (Journal article; Peer reviewed, 2021)Scientific data analyses often combine several computational tools in automated pipelines, or workflows. Thousands of such workflows have been used in the life sciences, though their composition has remained a cumbersome ... -
Robust Cross-Platform Workflows: How Technical and Scientific Communities Collaborate to Develop, Test and Share Best Practices for Data Analysis
Möller, Steffen; Prescott, Stuart W.; Wirzenius, Lars; Reinholdtsen, Petter; Chapman, Brad; Prins, Pjotr; Soiland-Reyes, Stian; Klötzl, Fabian; Bagnacani, Andrea; Kalaš, Matúš; Tille, Andreas; Crusoe, Michael R. (Peer reviewed; Journal article, 2017-09)Information integration and workflow technologies for data analysis have always been major fields of investigation in bioinformatics. A range of popular workflow suites are available to support analyses in computational ... -
Tools and data services registry: a community effort to document bioinformatics resources
Ison, Jon; Rapacki, Kristoffer; Ménager, Hervé; Kalaš, Matúš; et al., 69 authors (Peer reviewed; Journal article, 2015-11-03)Life sciences are yielding huge data sets that underpin scientific discoveries fundamental to improvement in human health, agriculture and the environment. In support of these discoveries, a plethora of databases and tools ... -
Using registries to integrate bioinformatics tools and services into workbench environments
Ménager, Hervé; Kalaš, Matúš; Rapacki, Kristoffer; Ison, Jon (Peer reviewed; Journal article, 2015)The diversity and complexity of bioinformatics resources presents significant challenges to their localisation, deployment and use, creating a need for reliable systems that address these issues. Meanwhile, users demand ...