BORA - UiB

Bergen Open Research Archive

Browsing Department of Informatics by Title

Bergen Open Research Archive

Browsing Department of Informatics by Title

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  • Patwary, Mostofa Ali (Doctoral thesis, The University of Bergen, 2011-08-26)
  • Abyaneh, Mohammad Reza Sohizadeh (Conference object, The author, 2012)
    Recently, Alomair et al. proposed the first Un- Conditionally Secure mutual authentication protocol for lowcost RFID systems(UCS-RFID). The security of the UCSRFID relies on five dynamic secret keys which are updated at ...
  • Schilling, Thorsten Ernst; Zajac, Pavol (Peer reviewed; Chapter, Versita Open, 2012)
    Many problems, including algebraic cryptanalysis, can be transformed to a problem of solving a (large) system of sparse Boolean equations. In this article we study 2 algorithms that can be used to remove some redundancy ...
  • El Ghami, Mohamed; Ivanov, I.D.; Roos, C.; Steihaug, Trond (Peer reviewed; Journal article, Academic Publications, 2008)
  • Brazma, Alvis; Jonassen, Inge; Vilo, Jaak; Ukkonen, Esko (Journal article, Cold Spring Harbor Laboratory Press, 1998-05-18)
    We performed a systematic analysis of gene upstream regions in the yeast genome for occurrences of regular expression-type patterns with the goal of identifying potential regulatory elements. To achieve this goal, we have ...
  • Hollup, Siv Midtun (Doctoral thesis, The University of Bergen, 2010-04-19)
    This thesis, which contains an introduction and four manuscripts, summarises my efforts during my the past four years to understand proteins, their structure and dynamics. The first manuscript presents a protocol that ...
  • Bredesen, Bjørn Andre (Master thesis, The University of Bergen, 2013-06-03)
    Polycomb/Trithorax Response Elements (PREs) are epigenetic elements that can maintain established transcriptional states over multiple cell divisions. Sequence motifs in known PREs have enabled genome-wide PRE prediction ...
  • Burrows, Eva (Doctoral thesis, 2011-05-23)
    Computational devices are rapidly evolving into massively parallel systems. Multicore processors are already standard; high performance processors such as the Cell/BE processor, graphics processing units (GPUs) ...
  • Polonsky, Andrew (Other, 2012-02-28)
  • Barsnes, Harald; Eidhammer, Ingvar; Cruciani, Véronique; Mikalsen, Svein-Ole (Journal article; Peer reviewed, IM Publications, 2008-09-22)
    Mass spectrometric analyses of peptides mainly rely on cleavage of proteins with proteases that have a defined specificity. The specificities of the proteases imply that there is not a random distribution of amino acids ...
  • Lerøy, Kjartan (Master thesis, The University of Bergen, 2010-05-31)
    The goal of bioinformatics is to support science and research in the field of biology through the application of information technology. Proteomics is a field within biology that deals with the study of proteins. This paper ...
  • Cabello, Adán; Danielsen, Lars Eirik; López-Tarrida, Antonio J.; Portillo, José R. (Peer reviewed; Journal article, Institute of Physics, 2012-06-27)
    We introduce a physical approach to social networks (SNs) in which each actor is characterized by a yes–no test on a physical system. This allows us to consider SNs beyond those originated by interactions based on pre-existing ...
  • Knudsen, Joakim Grahl (Master thesis, The University of Bergen, 2005-11-30)
  • Nilsen, Geir Kjetil (Master thesis, The University of Bergen, 2008-11-18)
    A fast algorithm for producing time-frequency representations (TFRs) is proposed. The resulting TFRs have optional time-frequency resolution up to optimality. The algorithm is further extended with a method known as ...
  • Hovland, Dag (Chapter; Peer reviewed, Springer, 2009)
    Regular expressions with numerical constraints are an extension of regular expressions, allowing to bound numerically the number of times that a subexpression should be matched. Expressions in this extension describe the ...
  • Nepal, Chirag (Doctoral thesis, The University of Bergen, 2013-05-03)
    For many years, RNAs were thought to be intermediate products between DNA and protein. The discovery of RNA interference (RNAi), a regulatory process that uses small non-coding RNAs to regulate gene expression at the ...
  • Malde, Ketil; Jonassen, Inge (Journal article, BioMed Central, 2008-01-18)
    Background Repeat masking is an important step in the EST analysis pipeline. For new species, genomic knowledge is scarce and good repeat libraries are typically unavailable. In these cases it is common practice to mask ...
  • Klingsheim, André N. (Doctoral thesis, The University of Bergen, 2008-09-24)
    Networked computer systems yield great value to businesses and governments, but also create risks. The eight papers in this thesis highlight vulnerabilities in computer systems that lead to security and privacy risks. A ...
  • Knudtsen, Christian Skauge (Master thesis, The University of Bergen, 2003)
  • Eichner, Christiane; Frost, Petter; Dysvik, Bjarte; Jonassen, Inge; Kristiansen, Bjørn; Nilsen, Frank (Peer reviewed; Journal article, BioMed Central, 2008-03-10)
    Background Lepeophtheirus salmonis is an ectoparasitic copepod feeding on skin, mucus and blood from salmonid hosts. Initial analysis of EST sequences from pre adult and adult stages of L. salmonis revealed a large ...

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