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CHOPCHOP v3: expanding the CRISPR web toolbox beyond genome editing
(Peer reviewed; Journal article, 2019-07-02)The CRISPR–Cas system is a powerful genome editing tool that functions in a diverse array of organisms and cell types. The technology was initially developed to induce targeted mutations in DNA, but CRISPR–Cas has now been ... -
Chromatin accessibility established by Pou5f3, Sox19b and Nanog primes genes for activity during zebrafish genome activation
(Journal article; Peer reviewed, 2020-01)In many organisms, early embryonic development is driven by maternally provided factors until the controlled onset of transcription during zygotic genome activation. The regulation of chromatin accessibility and its ... -
Chromatin and epigenetic features of long-range gene regulation
(Peer reviewed; Journal article, 2013-06-13)The precise regulation of gene transcription during metazoan development is controlled by a complex system of interactions between transcription factors, histone modifications and modifying enzymes and chromatin conformation. ... -
Classes of Intersection Digraphs with Good Algorithmic Properties
(Journal article; Peer reviewed, 2022)While intersection graphs play a central role in the algorithmic analysis of hard problems on undirected graphs, the role of intersection digraphs in algorithms is much less understood. We present several contributions ... -
Classes of intersection digraphs with good algorithmic properties
(Journal article; Peer reviewed, 2023)While intersection graphs play a central role in the algorithmic analysis of hard problems on undirected graphs, the role of intersection digraphs in algorithms is much less understood. We present several contributions ... -
Classification and computational search for planar functions in characteristic 3
(Master thesis, 2022-06-10) -
Classification of protein structures
(Master thesis, 1999-12) -
Classification of quadratic APN functions with coefficients in F2 for dimensions up to 9
(Journal article; Peer reviewed, 2020)Almost perfect nonlinear (APN) and almost bent (AB) functions are integral components of modern block ciphers and play a fundamental role in symmetric cryptography. In this paper, we describe a procedure for searching for ... -
Classifying and Measuring Student Problems and Misconceptions
(Norsk informatikkonferanse, Chapter; Peer reviewed, 2013)In this paper we report on an attempt to classify student problems and mistakes, and measuring the frequency of particular problems in a firstsemester programming course. We also propose a scheme for annotating student ... -
Clique-Based Neural Associative Memories
(Doctoral thesis, 2021-11-15)Auto-associative memories store a set of patterns and retrieve them by resorting to a part of their contents. This thesis focuses on developing and extending a type of associative memories relying on a sort of coded neural ... -
Close Relatives of Feedback Vertex Set Without Single-Exponential Algorithms Parameterized by Treewidth
(Journal article; Peer reviewed, 2020)The Cut & Count technique and the rank-based approach have lead to single-exponential FPT algorithms parameterized by treewidth, that is, running in time 2^𝒪(tw)n^𝒪(1), for Feedback Vertex Set and connected versions of ... -
Clustering to Given Connectivities
(Peer reviewed; Journal article, 2019)We define a general variant of the graph clustering problem where the criterion of density for the clusters is (high) connectivity. In Clustering to Given Connectivities, we are given an n-vertex graph G, an integer k, and ... -
Co-Degeneracy and Co-Treewidth: Using the Complement to Solve Dense Instances
(Journal article; Peer reviewed, 2021)Clique-width and treewidth are two of the most important and useful graph parameters, and several problems can be solved efficiently when restricted to graphs of bounded clique-width or treewidth. Bounded treewidth implies ... -
CO-expression Analysis of RNA-sequence Data from Parkinson's Disease Patients
(Master thesis, 2020-06-26)Parkinson’s disease is known as a progressive neurological disease characterized by motor symptoms. The motor symptoms are caused by neurodegeneration that causes dysfunctionalities in molecular functions crucial for ... -
Code-based cryptography: A superficial introduction
(Master thesis, 2018-10-06)This thesis provides an overview of some known post-quantum cryptography schemes with special attention given to code-based schemes. It also discusses some challenges that may arise trying to implement a McEliece-like ... -
Coded communication on the Internet
(Master thesis, 2019-06-26)The Internet is giving people many opportunities to interact, but for latency-sensitive activities, there is still room for improvement. It is not always good enough that messages arrive; some times they should arrive ... -
Coding for passive RFID communication
(Doctoral thesis, 2012-08-31)This dissertation elaborates on channel coding for reliable communication in passive RFID systems. RFID applications have been developed and used widely. Since a passive RFID tag has no power requirements, passive RFID has ... -
Coding for Privacy in Distributed Computing
(Doctoral thesis, 2023-04-21)I et distribuert datanettverk samarbeider flere enheter for å løse et problem. Slik kan vi oppnå mer enn summen av delene: samarbeid gjør at problemet kan løses mer effektivt, og samtidig blir det mulig å løse problemer ... -
Coherence for Monoidal Groupoids in HoTT
(Journal article; Peer reviewed, 2020)We present a proof of coherence for monoidal groupoids in homotopy type theory. An important role in the formulation and in the proof of coherence is played by groupoids with a free monoidal structure; these can be represented ... -
Coherent Conformational Degrees of Freedom as a Structural Basis for Allosteric Communication
(Peer reviewed; Journal article, 2011-12-08)Conformational changes in allosteric regulation can to a large extent be described as motion along one or a few coherent degrees of freedom. The states involved are inherent to the protein, in the sense that they are visited ...