Now showing items 12-31 of 273

  • CCZ-equivalence of bent vectorial functions and related constructions 

    Budaghyan, Lilya; Carlet, Claude (Springer, 2011-01-06)
    We observe that the CCZ-equivalence of bent vectorial functions over F2nFn2 (n even) reduces to their EA-equivalence. Then we show that in spite of this fact, CCZ-equivalence can be used for constructing bent functions ...
    Peer reviewedJournal article
  • Characteristics of 454 pyrosequencing data—enabling realistic simulation with flowsim 

    Balzer, Susanne Mignon; Malde, Ketil; Lanzén, Anders; Sharma, Animesh; Jonassen, Inge (Oxford University Press, 2010)
    Motivation: The commercial launch of 454 pyrosequencing in 2005was a milestone in genome sequencing in terms of performance and cost. Throughout the three available releases, average read lengths have increased to ∼500 ...
    Peer reviewedJournal article
  • Characteristics of Pyrosequencing Data – Analysis, Methods, and Tools 

    Balzer, Susanne Mignon (The University of Bergen, 2013-06-17)
    The introduction of this thesis provides background knowledge on the 454 sequencing technology and a detailed review of the most relevant sequencing artifacts. Chapter 1 puts the 454 sequencing technology into a historical ...
    Doctoral thesis
  • Choice of parameter for DP-based FPT algorithms: four case studies 

    Sæther, Sigve Hortemo (The University of Bergen, 2015-09-07)
    This thesis studies dynamic programming algorithms and structural parameters used when solving computationally hard problems. In particular, we look at algorithms that make use of structural decompositions to overcome ...
    Doctoral thesis
  • Classification of protein structures 

    Sætre, Narve (The University of Bergen, 1999-12)
    Master thesis
  • Classifying and Measuring Student Problems and Misconceptions 

    Rosbach, Alexander Hoem; Bagge, Anya Helene (Akademika forlag, 2013)
    In this paper we report on an attempt to classify student problems and mistakes, and measuring the frequency of particular problems in a firstsemester programming course. We also propose a scheme for annotating student ...
  • Coding for passive RFID communication 

    Yang, Guang (The University of Bergen, 2012-08-31)
    This dissertation elaborates on channel coding for reliable communication in passive RFID systems. RFID applications have been developed and used widely. Since a passive RFID tag has no power requirements, passive RFID ...
    Doctoral thesis
  • Coherent Conformational Degrees of Freedom as a Structural Basis for Allosteric Communication 

    Mitternacht, Simon; Berezovsky, Igor N. (Public Library of Science, 2011-12-08)
    Conformational changes in allosteric regulation can to a large extent be described as motion along one or a few coherent degrees of freedom. The states involved are inherent to the protein, in the sense that they are ...
    Peer reviewedJournal article
  • Colluding Tags Attack on the ECC-based Grouping Proofs for Rfids 

    Abyaneh, Mohammad Reza Sohizadeh (The author, 2012)
    Recently, a new privacy-preserving elliptic curve based grouping proof protocol with colluding tag prevention( CTP) has been proposed. The CTP protocol is claimed to be resistant against colluding tags attacks in which ...
    Conference object
  • Combining Aspect-Oriented and Strategic Programming 

    Kalleberg, Karl Trygve; Visser, Eelco (Elsevier, 2006-01)
    Properties such as logging, persistence, debugging, tracing, distribution, performance monitoring and exception handling occur in most programming paradigms and are normally very difficult or even impossible to modularizewith ...
    Journal article
  • Community Detection in Social Networks 

    Fasmer, Erlend Eindride (The University of Bergen, 2015-05-01)
    Social networks usually display a hierarchy of communities and it is the task of community detection algorithms to detect these communities and preferably also their hierarchical relationships. One common class of ...
    Master thesis
  • Community-driven development for computational biology at Sprints, Hackathons and Codefests 

    Möller, Steffen; Afgan, Enis; Banck, Michael; Bonnal, Raoul J. P.; Booth, Timothy; Chilton, John; Cock, Peter J. A.; Gumbel, Markus; Harris, Nomi; Holland, Richard; Kalaš, Matúš; Kaján, László; Kibukawa, Eri; Powel, David R.; Prins, Pjotr; Quinn, Jacqueline; Sallou, Olivier; Strozzi, Francesco; Seemann, Torsten; Sloggett, Clare; Soiland-Reyes, Stian; Spooner, William; Steinbiss, Sascha; Tille, Andreas; Travis, Anthony J.; Guimera, Roman V.; Katayama, Toshiaki; Chapman, Brad A. (BioMed Central, 2014-11-27)
    Background: Computational biology comprises a wide range of technologies and approaches. Multiple technologies can be combined to create more powerful workflows if the individuals contributing the data or providing tools ...
    Journal article
  • Comparing 17 graph parameters 

    Sasák, Róbert (The University of Bergen, 2010-08-02)
    Many parametrized problems were decided to be FPT or W-hard. However, there is still thousands of problems and parameters for which we do not know yet whether are FPT or W-hard. In this thesis, we provide a tool for extending ...
    Master thesis
  • Comparison of Discrete and Continuous Models for the Pooling Problem 

    Alfaki, Mohammed; Haugland, Dag (Dagstuhl Publishing, 2011)
    The pooling problem is an important global optimization problem which is encountered in many industrial settings. It is traditionally modeled as a bilinear, nonconvex optimization problem, and solved by branch-and-bound ...
    ChapterPeer reviewed
  • Comparison of Solving Techniques for Non-linear Sparse Equations over Finite Fields with Application in Cryptanalysis 

    Schilling, Thorsten Ernst (The University of Bergen, 2008)
    The work on this thesis gives a summary of the Gluing/Agreeing techniques, as well as a reference implementation of this methods. Furthermore widely used SAT-solving techniques are explained and a short insight to the ...
    Master thesis
  • A Comparison of Vertex and Edge Partitioning Approaches for Parallel Maximal Matching 

    Sørnes, Alexander N (The University of Bergen, 2013-12-09)
    This thesis will compare two ways of distributing data for parallel graph algorithms: vertex and edge partitioning, using a distributed memory system. Previous studies on the parallelization of graphs has often been ...
    Master thesis
  • Computation of Treespan. A Generalization of Bandwidth to Treelike Structures 

    Dregi, Markus Sortland (The University of Bergen, 2012-06-14)
    Motivated by a search game, Fomin, Heggernes and Telle [Algorithmica, 2005] defined the graph parameter treespan, a generalization of the well studied parameter bandwidth. Treespan is the maximum number of appearances ...
    Master thesis
  • Computational analysis of the evolutionary dynamics of proteins on a genomic scale 

    Hughes, Timothy (The University of Bergen, 2007-01-16)
    Biology is primarily concerned with the study of all phenotypic aspects of living organisms and evolutionary biology is more specifically interested in elucidating how different phenotypes evolved. Proteins (and RNA ...
    Doctoral thesis
  • Computing minimal triangulation in Time o(n^2.376) 

    Heggernes, Pinar; Telle, Jan Arne; Villanger, Yngve (SIAM Journals, 2005)
    Journal article
  • Conserved BK Channel-Protein Interactions Reveal Signals Relevant to Cell Death and Survival 

    Sokolowski, Bernd; Orchard, Sandra; Harvey, Margaret; Sridhar, Settu; Sakai, Yoshihisa (Public Library of Science, 2011-12-09)
    The large-conductance Ca2+-activated K+ (BK) channel and its b-subunit underlie tuning in non-mammalian sensory or hair cells, whereas in mammals its function is less clear. To gain insights into species differences and ...
    Peer reviewedJournal article