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Bergen Open Research Archive

Browsing Department of Informatics by Author "Jonassen, Inge"

Bergen Open Research Archive

Browsing Department of Informatics by Author "Jonassen, Inge"

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  • Balzer, Susanne Mignon; Malde, Ketil; Lanzén, Anders; Sharma, Animesh; Jonassen, Inge (Peer reviewed; Journal article, Oxford University Press, 2010)
    Motivation: The commercial launch of 454 pyrosequencing in 2005was a milestone in genome sequencing in terms of performance and cost. Throughout the three available releases, average read lengths have ...
  • Balzer, Susanne Mignon; Malde, Ketil; Grohme, Markus A.; Jonassen, Inge (Peer reviewed; Journal article, Oxford University Press, 2013)
    Motivation: Throughout the recent years, 454 pyrosequencing has emerged as an efficient alternative to traditional Sanger sequencing and is widely used in both de novo whole-genome sequencing ...
  • Stavrum, Ruth; Stavrum, Anne-Kristin; Valvatne, Håvard; Riley, Lee W.; Ulvestad, Elling; Jonassen, Inge; Aßmus, Jörg; Doherty, T. Mark; Grewal, Harleen M. S. (Peer reviewed; Journal article, Public Library of Science, 2011-10-24)
    The outcome of many infections depends on the initial interactions between agent and host. Aiming at elucidating the effect of the M. tuberculosis Mce1 protein complex on host transcriptional and immunological responses ...
  • Brazma, Alvis; Jonassen, Inge; Vilo, Jaak; Ukkonen, Esko (Journal article, Cold Spring Harbor Laboratory Press, 1998-05-18)
    We performed a systematic analysis of gene upstream regions in the yeast genome for occurrences of regular expression-type patterns with the goal of identifying potential regulatory elements. To achieve this goal, we have ...
  • Malde, Ketil; Jonassen, Inge (Journal article, BioMed Central, 2008-01-18)
    Background Repeat masking is an important step in the EST analysis pipeline. For new species, genomic knowledge is scarce and good repeat libraries are typically unavailable. In these cases it is common practice to mask ...
  • Eichner, Christiane; Frost, Petter; Dysvik, Bjarte; Jonassen, Inge; Kristiansen, Bjørn; Nilsen, Frank (Peer reviewed; Journal article, BioMed Central, 2008-03-10)
    Background Lepeophtheirus salmonis is an ectoparasitic copepod feeding on skin, mucus and blood from salmonid hosts. Initial analysis of EST sequences from pre adult and adult stages of L. salmonis revealed a large ...
  • Balzer, Susanne Mignon; Malde, Ketil; Jonassen, Inge (Peer reviewed; Journal article, Oxford University Press, 2011)
    Motivation: 454 pyrosequencing, by Roche Diagnostics, has emerged as an alternative to Sanger sequencing when it comes to read lengths, performance and cost, but shows higher per-base error rates. ...
  • Flikka, Kristian; Yadetie, Fekadu; Lægreid, Astrid; Jonassen, Inge (Journal article; Peer reviewed, BioMed Central, 2004-08-27)
    Background: Microarrays have emerged as the preferred platform for high throughput gene expression analysis. Cross-hybridization among genes with high sequence similarities can be a source of error reducing the ...

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