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    • Autoantibody discovery across monogenic, acquired, and COVID-19-associated autoimmunity with scalable PhIP-seq 

      Vazquez, Sara E.; Mann, Sabrina A.; Bodansky, Aaron; Kung, Andrew F.; Quandt, Zoe; Ferré, Elise M N; Landegren, Nils; Eriksson, Daniel; Bastard, Paul; Zhang, Shen-Ying; Liu, Jamin; Mitchell, Anthea; Proekt, Irina; Yu, David; Mandel-Brehm, Caleigh; Wang, Chung-Yu; Miao, Brenda; Sowa, Gavin; Zorn, Kelsey; Chan, Alice Y.; Tagi, Veronica M.; Shimizu, Chisato; Tremoulet, Adriana; Lynch, Kara; Wilson, Michael R.; Kämpe, Olle; Dobbs, Kerry; Delmonte, Ottavia M.; Bacchetta, Rosa; Notarangelo, Luigi D.; Burns, Jane C.; Casanova, Jean-Laurent; Lionakis, Michail S.; Torgerson, Troy R.; Anderson, Mark S.; DeRisi, Joseph L. (Journal article; Peer reviewed, 2022)
      Phage immunoprecipitation sequencing (PhIP-seq) allows for unbiased, proteome-wide autoantibody discovery across a variety of disease settings, with identification of disease-specific autoantigens providing new insight ...

    • Autoantigenic properties of the aminoacyl tRNA synthetase family in idiopathic inflammatory myopathies 

      Preger, Charlotta; Notarnicola, Antonella; Hellström, Cecilia; Wigren, Edvard; Fernandes-Cerqueira, Cátia; Kvarnström, Marika; Wahren Herlenius, Marie Elisabeth; Idborg, Helena; Lundberg, Ingrid E.; Persson, Helena; Gräslund, Susanne; Jakobsson, Per-Johan (Journal article; Peer reviewed, 2023)
      Objectives: Autoantibodies are thought to play a key role in the pathogenesis of idiopathic inflammatory myopathies (IIM). However, up to 40% of IIM patients, even those with clinical manifestations of anti-synthetase ...

    • Autocrine activation of MAPK signaling mediates intrinsic tolerance to androgen deprivation in LY6D prostate cancer cells 

      Steiner, Ivana; Flores-Tellez, Teresita del N.J.; Mevel, Renaud; Ali, Amin; Wang, Pengbo; Schofield, Pieta; Behan, Caron; Forsythe, Nicholas; Ashton, Garry; Taylor, Catherine; Mills, Ian Geoffrey; Oliveira, Pedro; McDade, Simon S.; Zaiss, Dietmar M.; Choudhury, Ananya; Lacaud, Georges; Baena, Esther (Journal article; Peer reviewed, 2023)
      The emergence of castration-resistant prostate cancer remains an area of unmet clinical need. We recently identified a subpopulation of normal prostate progenitor cells, characterized by an intrinsic resistance to androgen ...

    • Autoimmune Thyroid Disorders in Autoimmune Addison Disease 

      Stokland, Ann-Elin Meling; Ueland, Grethe Åstrøm; Lima, Kari; Grønning, Kaja; Finnes, Trine Elisabeth; Svendsen, Margrethe; Tomkowicz, Aneta Ewa; Holte, Synnøve Emblem; Sollid, Stina Therese; Debowska, Aleksandra; Singsås, Hallvard; Rensvik, Marthe Landsverk; Lejon, Helle; Sørmo, Dag-Erik; Svare, Anders; Blika, Sigrid; Milova, Petya; Korsgaard, Elin; Husby, Øystein; Breivik, Lars Ertesvåg; Jørgensen, Anders Palmstrøm; Husebye, Eystein Sverre (Journal article; Peer reviewed, 2022)
      Context: Autoimmune thyroid disease is the most common endocrine co-morbidity in autoimmune Addison's disease (AAD), but detailed investigations of prevalence and clinical course is lacking. Objective: Provide comprehensive ...

    • An automated approach for fringe frequency estimation and removal in infrared spectroscopy and hyperspectral imaging of biological samples 

      Solheim, Johanne Heitmann; Borondics, Ferenc; Zimmermann, Boris; Sandt, Christophe; Muthreich, Florian; Kohler, Achim (Journal article; Peer reviewed, 2021)
      In infrared spectroscopy of thin film samples, interference introduces distortions in spectra, commonly referred to as fringes. Fringes may alter absorbance peak ratios, which hampers the spectral analysis. We have previously ...

    • Automated detection of rock glaciers using deep learning and object-based image analysis 

      Robson, Benjamin Aubrey; Bolch, Tobias; MacDonell, Shelley; Hölbling, Daniel; Rastner, Philipp; Schaffer, Nicole (Journal article; Peer reviewed, 2020)
      Rock glaciers are an important component of the cryosphere and are one of the most visible manifestations of permafrost. While the significance of rock glacier contribution to streamflow remains uncertain, the contribution ...

    • Automated segmentation of endometrial cancer on MR images using deep learning 

      Hodneland, Erlend; Dybvik, Julie Andrea; Wagner-Larsen, Kari Strøno; Solteszova, Veronika; Zanna, Antonella; Fasmer, Kristine Eldevik; Krakstad, Camilla; Lundervold, Arvid; Lundervold, Alexander Selvikvåg; Salvesen, Øyvind; Erickson, Bradley J.; Haldorsen, Ingfrid S. (Journal article; Peer reviewed, 2021)
      Preoperative MR imaging in endometrial cancer patients provides valuable information on local tumor extent, which routinely guides choice of surgical procedure and adjuvant therapy. Furthermore, whole-volume tumor analyses ...

    • Automated splitting into batches for observational biomedical studies with sequential processing 

      Burger, Bram; Vaudel, Marc; Barsnes, Harald (Journal article; Peer reviewed, 2022)
      Experimental design usually focuses on the setting where treatments and/or other aspects of interest can be manipulated. However, in observational biomedical studies with sequential processing, the set of available samples ...

    • Automatic Classification of Handshapes in Russian Sign Language 

      Mukushev, Medet; Imashev, Alfarabi; Kimmelman, Vadim; Sandygulova, Anara (Chapter, 2020)
      Handshapes are one of the basic parameters of signs, and any phonological or phonetic analysis of a sign language must account for handshapes. Many sign languages have been carefully analysed by sign language linguists to ...

    • Automatic Detection of Manipulative Consent Management Platforms and the Journey into the Patterns of Darkness 

      Pedersen, Marius Alexander; Guribye, Frode; Slavkovik, Marija (Chapter, 2023)
      We study how to automatically classify different types of manipulative interface design pattern for Content Management Platforms (CMPs), also known as a cookie consents. Our approach uses a scraper to extract different ...

    • Automatic interpretation of salmon scales using deep learning 

      Vabø, Rune; Moen, Endre; Smolinski, Szymon; Husebø, Åse; Handegard, Nils Olav; Malde, Ketil (Journal article; Peer reviewed, 2021)
      For several fish species, age and other important biological information is manually inferred from visual scrutinization of scales, and reliable automatic methods are not widely available. Here, we apply Convolutional ...

    • Automation and redistribution of work: the impact of social distancing on live TV production 

      Okopnyi, Pavel; Guribye, Frode; Caruso, Valentina; Juhlin, Oskar (Journal article; Peer reviewed, 2023)

    • Automorphism groups of pseudo H-type algebras 

      Furutani, Kenro; Markina, Irina (Journal article; Peer reviewed, 2021)
      In the present paper we determine the group of automorphisms of pseudo H-type Lie algebras, that are two step nilpotent Lie algebras closely related to the Clifford algebras Cl(Rr,s).

    • Autonomy conquers all: a thematic analysis of nurses’ professional judgement encountering resistance to care from home-dwelling persons with dementia 

      Gjellestad, Åshild; Oksholm, Trine; Alvsvåg, Herdis; Bruvik, Frøydis Kristine (Journal article; Peer reviewed, 2022)
      Background Adequate care support from home health care nurses is needed to meet the needs of an increasing number of home-dwelling persons with dementia and those who resist care. The decisions nurses make in home health ...

    • Autosomal sdY pseudogenes explain discordances between phenotypic sex and DNA marker for sex identification in Atlantic salmon 

      Ayllon, Fernando; Solberg, Monica Favnebøe; Besnier, Francois; Fjelldal, Per Gunnar; Hansen, Tom Johnny; Wargelius, Anna; Edvardsen, Rolf Brudvik; Glover, Kevin (Journal article; Peer reviewed, 2020)
      Despite the key role that sex-determination plays in evolutionary processes, it is still poorly understood in many species. In salmonids, which are among the best studied fishes, the master sex-determining gene sexually ...

    • Autozygosity mapping and time-to-spontaneous delivery in Norwegian parent-offspring trios 

      Solé-Navais, Pol; Bacelis, Jonas; Helgeland, Øyvind; Modzelewska, Dominika; Vaudel, Marc; Flatley, Christopher; Andreassen, Ole; Njølstad, Pål Rasmus; Muglia, Louis J.; Johansson, Stefan; Zhang, Ge; Jacobsson, Bo (Journal article; Peer reviewed, 2020)
      Parental genetic relatedness may lead to adverse health and fitness outcomes in the offspring. However, the degree to which it affects human delivery timing is unknown. We use genotype data from ≃25 000 parent-offspring ...

    • Auxilin is a novel susceptibility gene for congenital heart block which directly impacts fetal heart function 

      Meisgen, Sabrina; Hedlund, Malin; Ambrosi, Aurelie; Folkersen, Lasse; Ottosson, Vijole; Forsberg, David; Thorlacius, Gudny Ella; Biavati, Luca; Strandberg, Linn; Mofors, Johannes; Ramskold, Daniel; Ruhrmann, Sabrina; Meneghel, Lauro; Nyberg, William; Espinosa, Alexander; Hamilton, Robert Murray; Franco-Cereceda, Anders; Hamsten, Anders; Olsson, Tomas; Greene, Lois; Eriksson, Per; Gemzell-Danielsson, Kristina; Salomonsson, Stina; Kuchroo, Vijay K; Herlenius, Eric; Kockum, Ingrid; Sonesson, Sven-Erik; Herlenius, Marie Elisabeth Wahren (Journal article; Peer reviewed, 2022)
      Objective: Neonatal lupus erythematosus (NLE) may develop after transplacental transfer of maternal autoantibodies with cardiac manifestations (congenital heart block, CHB) including atrioventricular block, atrial and ...

    • Availability and analytical quality of hemoglobin A1c point-of-care testing in general practitioners’ offices are associated with better glycemic control in type 2 diabetes 

      Tollånes, Mette Christophersen; Jenum, Anne Karen; Berg, Tore Julsrud; Løvaas, Karianne Fjeld; Cooper, John; Sandberg, Sverre (Journal article; Peer reviewed, 2020)
      Background: It is not clear if point-of-care (POC) testing for hemoglobin A1c (HbA1c) is associated with glycemic control in type 2 diabetes. Methods: In this cross-sectional study, we linked general practitioner (GP) ...

    • Availability of extended-release naltrexone may increase the number of opioid-dependent individuals in treatment: Extension of a randomized clinical trial 

      Solli, Kristin Klemmetsby; Kunøe, Nikolaj; Latif, Zill-E-Huma; Haase, Kamni Sharma; Opheim, Arild; Krajci, Peter; Gaulen, Zhanna; Saltyte Benth, Jurate; Tanum, Lars Håkon Reiestad (Journal article; Peer reviewed, 2019)
      Background and objective: Opioid maintenance treatment (OMT) is highly available in Norway, but only 50% of opioid-dependent individuals are enrolled in such programs. This study was aimed at examining if availability of ...

    • Avkobling og transformasjon: Meditasjonsretreater på Dharma Mountain mellom popularisering og religiøst fellesskap 

      Hanky, Henriette (Journal article; Peer reviewed, 2021)
      While meditation has undeniably become a part of popular culture, the term encompasses a wide variety of practices and conceptualizations on the religious-secular spectrum. In this paper, I explore how this wide scope is ...