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dc.contributor.authorShaikh, Bilal
dc.contributor.authorSmith, Lucian P
dc.contributor.authorVasilescu, Dan
dc.contributor.authorMarupilla, Gnaneswara
dc.contributor.authorWilson, Michael
dc.contributor.authorAgmon, Eran
dc.contributor.authorAgnew, Henry
dc.contributor.authorAndrews, Steven S
dc.contributor.authorAnwar, Azraf
dc.contributor.authorBeber, Moritz E
dc.contributor.authorBergmann, Frank T
dc.contributor.authorBrooks, David
dc.contributor.authorBrusch, Lutz
dc.contributor.authorCalzone, Laurence
dc.contributor.authorChoi, Kiri
dc.contributor.authorCooper, Joshua
dc.contributor.authorDetloff, John
dc.contributor.authorDrawert, Brian
dc.contributor.authorDumontier, Michel
dc.contributor.authorErmentrout, G Bard
dc.contributor.authorFaeder, James R
dc.contributor.authorFreiburger, Andrew P
dc.contributor.authorFröhlich, Fabian
dc.contributor.authorFunahashi, Akira
dc.contributor.authorGarny, Alan
dc.contributor.authorGennari, John H
dc.contributor.authorGleeson, Padraig
dc.contributor.authorGoelzer, Anne
dc.contributor.authorHaiman, Zachary
dc.contributor.authorHasenauer, Jan
dc.contributor.authorHellerstein, Joseph L
dc.contributor.authorHermjakob, Henning
dc.contributor.authorHoops, Stefan
dc.contributor.authorIson, Jon C
dc.contributor.authorJahn, Diego
dc.contributor.authorJakubowski, Henry V
dc.contributor.authorJordan, Ryann
dc.contributor.authorKalaš, Matúš
dc.contributor.authorKönig, Matthias
dc.contributor.authorLiebermeister, Wolfram
dc.contributor.authorSheriff, Rahuman S. Malik
dc.contributor.authorMandal, Synchon
dc.contributor.authorMcDougal, Robert
dc.contributor.authorMedley, J Kyle
dc.contributor.authorMendes, Pedro
dc.contributor.authorMüller, Robert
dc.contributor.authorMyers, Chris J
dc.contributor.authorNaldi, Aurelien
dc.contributor.authorNguyen, Tung V. N
dc.contributor.authorNickerson, David P
dc.contributor.authorOlivier, Brett G
dc.contributor.authorPatoliya, Drashti
dc.contributor.authorPaulevé, Loïc
dc.contributor.authorPetzold, Linda R
dc.contributor.authorPriya, Ankita
dc.contributor.authorRampadarath, Anand K
dc.contributor.authorRohwer, Johann M
dc.contributor.authorSaglam, Ali S
dc.contributor.authorSingh, Dilawar
dc.contributor.authorSinha, Ankur
dc.contributor.authorSnoep, Jacky
dc.contributor.authorSorby, Hugh
dc.contributor.authorSpangler, Ryan
dc.contributor.authorStarruß, Jörn
dc.contributor.authorThomas, Payton J
dc.contributor.authorVan Niekerk, David
dc.contributor.authorWeindl, Daniel
dc.contributor.authorZhang, Fengkai
dc.contributor.authorZhukova, Anna
dc.contributor.authorGoldberg, Arthur P
dc.contributor.authorSchaff, James C
dc.contributor.authorBlinov, Michael L
dc.contributor.authorSauro, Herbert M
dc.contributor.authorMoraru, Ion I
dc.contributor.authorKarr, Jonathan R
dc.date.accessioned2022-09-14T09:43:32Z
dc.date.available2022-09-14T09:43:32Z
dc.date.created2022-08-22T10:43:29Z
dc.date.issued2022
dc.identifier.issn0305-1048
dc.identifier.urihttps://hdl.handle.net/11250/3017759
dc.description.abstractComputational models have great potential to accelerate bioscience, bioengineering, and medicine. However, it remains challenging to reproduce and reuse simulations, in part, because the numerous formats and methods for simulating various subsystems and scales remain siloed by different software tools. For example, each tool must be executed through a distinct interface. To help investigators find and use simulation tools, we developed BioSimulators (https://biosimulators.org), a central registry of the capabilities of simulation tools and consistent Python, command-line and containerized interfaces to each version of each tool. The foundation of BioSimulators is standards, such as CellML, SBML, SED-ML and the COMBINE archive format, and validation tools for simulation projects and simulation tools that ensure these standards are used consistently. To help modelers find tools for particular projects, we have also used the registry to develop recommendation services. We anticipate that BioSimulators will help modelers exchange, reproduce, and combine simulations.en_US
dc.language.isoengen_US
dc.publisherOxford University Pressen_US
dc.rightsNavngivelse 4.0 Internasjonal*
dc.rights.urihttp://creativecommons.org/licenses/by/4.0/deed.no*
dc.titleBioSimulators: a central registry of simulation engines and services for recommending specific toolsen_US
dc.typeJournal articleen_US
dc.typePeer revieweden_US
dc.description.versionpublishedVersionen_US
dc.rights.holderCopyright 2022 the authorsen_US
cristin.ispublishedtrue
cristin.fulltextoriginal
cristin.qualitycode2
dc.identifier.doi10.1093/nar/gkac331
dc.identifier.cristin2044873
dc.source.journalNucleic Acids Research (NAR)en_US
dc.source.pagenumberW108-W114en_US
dc.identifier.citationNucleic Acids Research (NAR). 2022, 50 (1), W108-W114.en_US
dc.source.volume50en_US
dc.source.issue1en_US


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