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Ecological Momentary Assessment in Internet-Delivered Psychological Treatments using Wearable Technology
(Master thesis, 2022-06-01)The growing prevalence of mental health problems is a global concern. Current psychological treatments are effective for a wide range of mental health problems. Yet, treatments today fall short with regards to scalability ... -
EDAM-bioimaging: the ontology of bioimage informatics operations, topics, data, and formats (update 2020)
(Others, 2020)EDAM is a well-established ontology of operations, topics, types of data, and data formats that are used in bioinformatics and its neighbouring fields [1,2] . EDAM-bioimaging is an extension of EDAM dedicated to bioimage ... -
EDAM: an ontology of bioinformatics operations, types of data and identifiers, topics and formats
(Peer reviewed; Journal article, 2013)Motivation: Advancing the search, publication and integration of bioinformatics tools and resources demands consistent machine-understandable descriptions. A comprehensive ontology allowing such descriptions is therefore ... -
EDAM: the bioscientific data analysis ontology (update 2021) [version 1; not peer reviewed]
(Others, 2021)EDAM [1] is a domain ontology of data analysis and data management in bio- and other sciences, and science-based applications. It comprises concepts related to analysis, modelling, optimisation, and data life-cycle. ... -
EDAM: the ontology of bioinformatics operations, topics, data, and formats (update 2020)
(Others, 2020)Project website: http://edamontology.org Source code: https://github.com/edamontology/edamontology License: CC BY-SA 4.0 EDAM is an ontology of well-established, familiar concepts that are prevalent within bioinformatics, ... -
Editing to Eulerian Graphs
(Journal article; Peer reviewed, 2014)We investigate the problem of modifying a graph into a connected graph in which the degree of each vertex satisfies a prescribed parity constraint. Let ea, ed and vd denote the operations edge addition, edge deletion and ... -
Efficient CRISPR-Cas9-mediated generation of knockin human pluripotent stem cells lacking undesired mutations at the targeted locus
(Peer reviewed; Journal article, 2015-05)The CRISPR-Cas9 system has the potential to revolutionize genome editing in human pluripotent stem cells (hPSCs), but its advantages and pitfalls are still poorly understood. We systematically tested the ability of CRISPR-Cas9 ... -
Efficient hash maps to G2 on BLS curves
(Journal article; Peer reviewed, 2022)When a pairing e:G1×G2→GT, on an elliptic curve E defined over a finite field Fq, is exploited for an identity-based protocol, there is often the need to hash binary strings into G1 and G2. Traditionally, if E admits a ... -
Efficient implementation of LowMC in HElib
(Master thesis, 2018-06-19)LowMC is a symmetric block cipher designed for fully homomorphic encryption. This thesis focuses on Martin Albrecht’s implementation of the cipher in the FHE library HElib, and how his implementation can be improved when ... -
Efficient Minimum Weight Vertex Cover Heuristics Using Graph Neural Networks
(Journal article; Peer reviewed, 2022)Minimum weighted vertex cover is the NP-hard graph problem of choosing a subset of vertices incident to all edges such that the sum of the weights of the chosen vertices is minimum. Previous efforts for solving this in ... -
Efficiently Locating Schema Incompatibilities in an eXtensible Markup Language
(Master thesis, 2003) -
Efforts towards accessible and reliable bioinformatics
(Doctoral thesis, 2015-11-19)The aim of the presented work was contributing to making scientific computing more accessible, reliable, and thus more efficient for researchers, primarily computational biologists and molecular biologists. Many approaches ... -
Elastic Grid Resources using Cloud Technologies
(Master thesis, 2014-06-02)A Large Ion Collider Experiment (ALICE) is one of four experiments at the Large Hadron Collider (LHC) at CERN. The detectors in the ALICE experiment produce data at a rate of 4 GB/s after being filtered and compressed ... -
The ELIXIR Biodiversity Community: Understanding short- and long-term changes in biodiversity
(Journal article; Peer reviewed, 2024)Biodiversity loss is now recognised as one of the major challenges for humankind to address over the next few decades. Unless major actions are taken, the sixth mass extinction will lead to catastrophic effects on the ... -
The EMBRACE web service collection
(Peer reviewed; Journal article, 2010-05-10)The EMBRACE (European Model for Bioinformatics Research and Community Education) web service collection is the culmination of a 5-year project that set out to investigate issues involved in developing and deploying web ... -
Emerging Era of Biomolecular Membrane Simulations: Automated Physically-Justified Force Field Development and Quality-Evaluated Databanks
(Journal article; Peer reviewed, 2022)Molecular simulations of biological membranes and proxies thereof are entering a new era characterized by several key aspects. Progress starts with the realization that the outcome of the simulations can only be as good ... -
Employing Deep Learning for Fish Recognition
(Master thesis, 2018-08-21)Underwater imagery processing is in high demand, but the unrestricted environment makes it difficult to develop methods for analyzing it. Not only is obtaining a dataset for a single species difficult, but there are reported ... -
Enabling same-day delivery using a drone resupply model with transshipment points
(Journal article; Peer reviewed, 2023)We study a hybrid logistics delivery model which incorporates trucks and drones. In this model, named the Drone Resupply Model with Transshipment Points (DRMTP), drones are used to resupply transshipment points where trucks ... -
Enabling unstructured-mesh computation on massively tiled AI processors: An example of accelerating in silico cardiac simulation
(Journal article; Peer reviewed, 2023)A new trend in processor architecture design is the packaging of thousands of small processor cores into a single device, where there is no device-level shared memory but each core has its own local memory. Thus, both the ... -
Encoding and decoding of several optimal rank metric codes
(Journal article; Peer reviewed, 2022)This paper presents encoding and decoding algorithms for several families of optimal rank metric codes whose codes are in restricted forms of symmetric, alternating and Hermitian matrices. First, we show the evaluation ...