dc.contributor.author | Muth, Thilo | en_US |
dc.contributor.author | Weilnböck, Lisa | en_US |
dc.contributor.author | Rapp, Erdmann | en_US |
dc.contributor.author | Huber, Christian G. | en_US |
dc.contributor.author | Martens, Lennart | en_US |
dc.contributor.author | Vaudel, Marc | en_US |
dc.contributor.author | Barsnes, Harald | en_US |
dc.date.accessioned | 2017-09-20T12:43:23Z | |
dc.date.available | 2017-09-20T12:43:23Z | |
dc.date.issued | 2014 | |
dc.Published | Muth T, Weilnböck, Rapp, Huber, Martens L, Vaudel M, Barsnes H. DeNovoGUI: an open source graphical user interface for de novo sequencing of tandem mass spectra. Journal of Proteome Research. 2014;13(2):1143-1146 | eng |
dc.identifier.issn | 1535-3907 | |
dc.identifier.issn | 1535-3893 | |
dc.identifier.uri | https://hdl.handle.net/1956/16686 | |
dc.description.abstract | De novo sequencing is a popular technique in proteomics for identifying peptides from tandem mass spectra without having to rely on a protein sequence database. Despite the strong potential of de novo sequencing algorithms, their adoption threshold remains quite high. We here present a user-friendly and lightweight graphical user interface called DeNovoGUI for running parallelized versions of the freely available de novo sequencing software PepNovo+, greatly simplifying the use of de novo sequencing in proteomics. Our platform-independent software is freely available under the permissible Apache2 open source license. Source code, binaries, and additional documentation are available at http://denovogui.googlecode.com. | en_US |
dc.language.iso | eng | eng |
dc.publisher | American Chemical Society | eng |
dc.subject | bioinformatics | eng |
dc.subject | de novo | eng |
dc.subject | Mass spectrometry | eng |
dc.subject | PepNovo+ | eng |
dc.subject | peptide identification | eng |
dc.title | DeNovoGUI: an open source graphical user interface for de novo sequencing of tandem mass spectra | en_US |
dc.type | Peer reviewed | |
dc.type | Journal article | |
dc.date.updated | 2017-09-06T10:49:15Z | |
dc.description.version | acceptedVersion | en_US |
dc.rights.holder | Copyright 2013 American Chemical Society | |
dc.identifier.doi | https://doi.org/10.1021/pr4008078 | |
dc.identifier.cristin | 1141006 | |
dc.source.journal | Journal of Proteome Research | |
dc.relation.project | Norges forskningsråd: 204833 | |
dc.subject.nsi | VDP::Medisinske fag: 700::Basale medisinske, odontologiske og veterinærmedisinske fag: 710::Medisinsk biokjemi: 726 | |
dc.subject.nsi | VDP::Midical sciences: 700::Basic medical, dental and veterinary sciences: 710::Medical biochemistry: 726 | |